Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QOS64_RS20985 Genome accession   NZ_OX460973
Coordinates   4180789..4181307 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4175789..4186307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS64_RS20955 - 4176986..4177366 (-) 381 WP_069006962.1 VOC family protein -
  QOS64_RS20960 - 4177418..4178362 (-) 945 WP_168984691.1 LacI family DNA-binding transcriptional regulator -
  QOS64_RS20965 xth 4178425..4179183 (-) 759 WP_015240985.1 exodeoxyribonuclease III -
  QOS64_RS20970 - 4179180..4179737 (-) 558 WP_168984690.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QOS64_RS20975 - 4179734..4180315 (-) 582 WP_160222791.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  QOS64_RS20980 rpsR 4180506..4180745 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  QOS64_RS20985 ssbA 4180789..4181307 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  QOS64_RS20990 rpsF 4181347..4181634 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  QOS64_RS20995 ychF 4181746..4182846 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  QOS64_RS21000 - 4182973..4184976 (-) 2004 WP_168984689.1 molybdopterin-dependent oxidoreductase -
  QOS64_RS21005 - 4185023..4185229 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1159485 QOS64_RS20985 WP_004392979.1 4180789..4181307(-) (ssbA) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1159485 QOS64_RS20985 WP_004392979.1 4180789..4181307(-) (ssbA) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment