Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QOR54_RS09115 Genome accession   NZ_OX460968
Coordinates   1787557..1788048 (-) Length   163 a.a.
NCBI ID   WP_000609585.1    Uniprot ID   A0AAV3JH34
Organism   Streptococcus agalactiae isolate MRI Z2-342     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1785952..1787085 1787557..1788048 flank 472


Gene organization within MGE regions


Location: 1785952..1788048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR54_RS09105 - 1785952..1787085 (-) 1134 WP_000564846.1 ISAs1-like element IS1548 family transposase -
  QOR54_RS09110 rpsR 1787273..1787512 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  QOR54_RS09115 ssbA 1787557..1788048 (-) 492 WP_000609585.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18165.81 Da        Isoelectric Point: 4.9119

>NTDB_id=1159403 QOR54_RS09115 WP_000609585.1 1787557..1788048(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-342]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1159403 QOR54_RS09115 WP_000609585.1 1787557..1788048(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-342]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment