Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QOR54_RS04560 Genome accession   NZ_OX460968
Coordinates   835170..836117 (+) Length   315 a.a.
NCBI ID   WP_000903642.1    Uniprot ID   A0AAV3JK20
Organism   Streptococcus agalactiae isolate MRI Z2-342     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 830170..841117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR54_RS04535 - 830504..831184 (+) 681 WP_000656582.1 VIT family protein -
  QOR54_RS04540 - 831335..832036 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  QOR54_RS04545 - 832108..833079 (-) 972 WP_283571721.1 glutathione S-transferase family protein -
  QOR54_RS04550 - 833175..833894 (+) 720 WP_001234956.1 pseudouridine synthase -
  QOR54_RS04555 - 833967..835118 (+) 1152 WP_001086200.1 MFS transporter -
  QOR54_RS04560 coiA 835170..836117 (+) 948 WP_000903642.1 competence protein CoiA family protein Machinery gene
  QOR54_RS04565 pepF 836133..837938 (+) 1806 WP_001282902.1 oligoendopeptidase F Regulator
  QOR54_RS04570 - 838133..838759 (+) 627 WP_000736935.1 HAD hydrolase-like protein -
  QOR54_RS04575 - 838833..839540 (+) 708 WP_000250853.1 O-methyltransferase -
  QOR54_RS04580 prsA 839601..840530 (+) 930 WP_000857822.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37807.57 Da        Isoelectric Point: 9.5842

>NTDB_id=1159389 QOR54_RS04560 WP_000903642.1 835170..836117(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-342]
MLIAKDKQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1159389 QOR54_RS04560 WP_000903642.1 835170..836117(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-342]
ATGTTAATTGCTAAAGACAAACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAGGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAACGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTGACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTAGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492
  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492
  coiA Streptococcus pneumoniae D39

49.051

100

0.492
  coiA Streptococcus pneumoniae R6

49.051

100

0.492
  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41

Multiple sequence alignment