Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QOR58_RS08940 Genome accession   NZ_OX460941
Coordinates   1733109..1733600 (-) Length   163 a.a.
NCBI ID   WP_000609585.1    Uniprot ID   A0AAV3JH34
Organism   Streptococcus agalactiae isolate MRI Z2-304     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1728109..1738600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR58_RS08925 - 1731015..1731686 (-) 672 WP_000174849.1 DUF1129 family protein -
  QOR58_RS08930 - 1731711..1732655 (-) 945 WP_000812124.1 magnesium transporter CorA family protein -
  QOR58_RS08935 rpsR 1732825..1733064 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  QOR58_RS08940 ssbA 1733109..1733600 (-) 492 WP_000609585.1 single-stranded DNA-binding protein Machinery gene
  QOR58_RS08945 rpsF 1733612..1733899 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  QOR58_RS08950 mutY 1734962..1736116 (+) 1155 WP_000566234.1 A/G-specific adenine glycosylase -
  QOR58_RS08955 - 1736293..1736886 (+) 594 WP_000402390.1 helix-turn-helix transcriptional regulator -
  QOR58_RS08960 trxA 1736932..1737264 (-) 333 WP_001932060.1 thioredoxin -
  QOR58_RS08965 - 1737327..1737827 (-) 501 WP_000446810.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18165.81 Da        Isoelectric Point: 4.9119

>NTDB_id=1159155 QOR58_RS08940 WP_000609585.1 1733109..1733600(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-304]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1159155 QOR58_RS08940 WP_000609585.1 1733109..1733600(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-304]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCATCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCATTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment