Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QOR45_RS08270 Genome accession   NZ_OX460935
Coordinates   1636362..1637051 (-) Length   229 a.a.
NCBI ID   WP_000516681.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-286     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1631362..1642051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR45_RS08250 dnaI 1632165..1633067 (-) 903 WP_000843626.1 primosomal protein DnaI -
  QOR45_RS08255 - 1633064..1634239 (-) 1176 WP_000074509.1 DnaD domain protein -
  QOR45_RS08260 nrdR 1634239..1634718 (-) 480 WP_001203682.1 transcriptional regulator NrdR -
  QOR45_RS08265 - 1634867..1636372 (-) 1506 WP_000791114.1 HAMP domain-containing histidine kinase -
  QOR45_RS08270 covR 1636362..1637051 (-) 690 WP_000516681.1 response regulator transcription factor Regulator
  QOR45_RS08275 - 1637286..1637819 (-) 534 WP_000927547.1 YceD family protein -
  QOR45_RS08280 htpX 1637924..1638814 (-) 891 WP_000966816.1 zinc metalloprotease HtpX -
  QOR45_RS08285 - 1638835..1639389 (-) 555 WP_000537055.1 LemA family protein -
  QOR45_RS08290 rsmG 1639517..1640230 (+) 714 WP_000188799.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QOR45_RS08295 - 1640245..1641624 (+) 1380 WP_000680114.1 potassium transporter TrkG -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26547.55 Da        Isoelectric Point: 4.8094

>NTDB_id=1158997 QOR45_RS08270 WP_000516681.1 1636362..1637051(-) (covR) [Streptococcus agalactiae isolate MRI Z2-286]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1158997 QOR45_RS08270 WP_000516681.1 1636362..1637051(-) (covR) [Streptococcus agalactiae isolate MRI Z2-286]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTCTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGAGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTCATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTATTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.476

100

0.795
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.228

99.563

0.659
  vicR Streptococcus mutans UA159

45.887

100

0.463
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.437

Multiple sequence alignment