Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QOR45_RS06295 Genome accession   NZ_OX460935
Coordinates   1228903..1229850 (-) Length   315 a.a.
NCBI ID   WP_000903640.1    Uniprot ID   A0AAD2WXV2
Organism   Streptococcus agalactiae isolate MRI Z2-286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1223903..1234850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR45_RS06275 prsA 1224490..1225419 (-) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -
  QOR45_RS06280 - 1225480..1226187 (-) 708 WP_000250859.1 O-methyltransferase -
  QOR45_RS06285 - 1226261..1226887 (-) 627 WP_000736936.1 HAD hydrolase-like protein -
  QOR45_RS06290 pepF 1227082..1228887 (-) 1806 WP_001282893.1 oligoendopeptidase F Regulator
  QOR45_RS06295 coiA 1228903..1229850 (-) 948 WP_000903640.1 competence protein CoiA family protein Machinery gene
  QOR45_RS06300 - 1229902..1231053 (-) 1152 WP_001086195.1 MFS transporter -
  QOR45_RS06305 - 1231126..1231845 (-) 720 WP_001234959.1 pseudouridine synthase -
  QOR45_RS06310 - 1231941..1232897 (+) 957 WP_000523784.1 glutathione S-transferase family protein -
  QOR45_RS06315 nagB 1232969..1233670 (-) 702 WP_001263959.1 glucosamine-6-phosphate deaminase -
  QOR45_RS06320 - 1233821..1234501 (-) 681 WP_000656582.1 VIT family protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37751.45 Da        Isoelectric Point: 9.6050

>NTDB_id=1158991 QOR45_RS06295 WP_000903640.1 1228903..1229850(-) (coiA) [Streptococcus agalactiae isolate MRI Z2-286]
MLIAKDKQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFHHENESNEHLQLKAKLYMSLSRENE
TTLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1158991 QOR45_RS06295 WP_000903640.1 1228903..1229850(-) (coiA) [Streptococcus agalactiae isolate MRI Z2-286]
ATGTTAATTGCTAAAGACAAACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAAGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTCATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTACGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGGTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTGCTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATATCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAGGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTGACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTGGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492
  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492
  coiA Streptococcus pneumoniae D39

49.051

100

0.492
  coiA Streptococcus pneumoniae R6

49.051

100

0.492
  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41

Multiple sequence alignment