Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QOR46_RS08780 Genome accession   NZ_OX460934
Coordinates   1718526..1719215 (-) Length   229 a.a.
NCBI ID   WP_000516681.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-335     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713526..1724215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR46_RS08760 dnaI 1714329..1715231 (-) 903 WP_000843624.1 primosomal protein DnaI -
  QOR46_RS08765 - 1715228..1716403 (-) 1176 WP_000074509.1 DnaD domain protein -
  QOR46_RS08770 nrdR 1716403..1716882 (-) 480 WP_001203682.1 transcriptional regulator NrdR -
  QOR46_RS08775 - 1717031..1718536 (-) 1506 WP_000791116.1 HAMP domain-containing histidine kinase -
  QOR46_RS08780 covR 1718526..1719215 (-) 690 WP_000516681.1 response regulator transcription factor Regulator
  QOR46_RS08785 - 1719450..1719983 (-) 534 WP_000927540.1 YceD family protein -
  QOR46_RS08790 htpX 1720088..1720978 (-) 891 WP_000966821.1 zinc metalloprotease HtpX -
  QOR46_RS08795 - 1720999..1721553 (-) 555 WP_000537056.1 LemA family protein -
  QOR46_RS08800 rsmG 1721681..1722394 (+) 714 WP_000188792.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QOR46_RS08805 - 1722409..1723788 (+) 1380 WP_000680112.1 potassium transporter TrkG -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26547.55 Da        Isoelectric Point: 4.8094

>NTDB_id=1158947 QOR46_RS08780 WP_000516681.1 1718526..1719215(-) (covR) [Streptococcus agalactiae isolate MRI Z2-335]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1158947 QOR46_RS08780 WP_000516681.1 1718526..1719215(-) (covR) [Streptococcus agalactiae isolate MRI Z2-335]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTTTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGGGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTCATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTGTTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.476

100

0.795
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.228

99.563

0.659
  vicR Streptococcus mutans UA159

45.887

100

0.463
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.437

Multiple sequence alignment