Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QOR44_RS03840 Genome accession   NZ_OX460931
Coordinates   721853..722800 (+) Length   315 a.a.
NCBI ID   WP_000903646.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716853..727800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR44_RS03815 - 717202..717882 (+) 681 WP_000656582.1 VIT family protein -
  QOR44_RS03820 - 718033..718734 (+) 702 WP_001263957.1 glucosamine-6-phosphate deaminase -
  QOR44_RS03825 - 718806..719762 (-) 957 WP_000523783.1 glutathione S-transferase family protein -
  QOR44_RS03830 - 719858..720577 (+) 720 WP_001234960.1 pseudouridine synthase -
  QOR44_RS03835 - 720650..721801 (+) 1152 WP_001086191.1 MFS transporter -
  QOR44_RS03840 coiA 721853..722800 (+) 948 WP_000903646.1 competence protein CoiA family protein Machinery gene
  QOR44_RS03845 pepF 722816..724621 (+) 1806 WP_001282901.1 oligoendopeptidase F Regulator
  QOR44_RS03850 - 724816..725442 (+) 627 WP_000736931.1 HAD-IA family hydrolase -
  QOR44_RS03855 - 725516..726223 (+) 708 WP_000250854.1 O-methyltransferase -
  QOR44_RS03860 prsA 726284..727213 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37809.55 Da        Isoelectric Point: 9.6103

>NTDB_id=1158880 QOR44_RS03840 WP_000903646.1 721853..722800(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-174]
MLIAKDRQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFHHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1158880 QOR44_RS03840 WP_000903646.1 721853..722800(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-174]
ATGTTAATTGCTAAAGACAGACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAAGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTCATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTGTCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGGTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTGCTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTGACTCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTGGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492
  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492
  coiA Streptococcus pneumoniae D39

49.051

100

0.492
  coiA Streptococcus pneumoniae R6

49.051

100

0.492
  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41

Multiple sequence alignment