Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   QOS47_RS05525 Genome accession   NZ_OX460909
Coordinates   1131029..1131628 (+) Length   199 a.a.
NCBI ID   WP_045032719.1    Uniprot ID   A0AAW4ZW16
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126029..1136628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS05505 - 1127208..1127675 (+) 468 WP_045032725.1 RDD family protein -
  QOS47_RS05510 - 1127963..1128862 (-) 900 WP_065192436.1 lysine exporter LysO family protein -
  QOS47_RS05515 - 1129131..1130045 (-) 915 WP_065192435.1 HDOD domain-containing protein -
  QOS47_RS05520 - 1130166..1130756 (-) 591 WP_283597264.1 LON peptidase substrate-binding domain-containing protein -
  QOS47_RS05525 tfoX 1131029..1131628 (+) 600 WP_045032719.1 TfoX/Sxy family DNA transformation protein Regulator
  QOS47_RS05530 dsdC 1131730..1132638 (+) 909 WP_107228997.1 DNA-binding transcriptional regulator DsdC -
  QOS47_RS05535 - 1132732..1133724 (-) 993 WP_107228998.1 2-hydroxyacid dehydrogenase -
  QOS47_RS05540 - 1133965..1135281 (+) 1317 WP_232605296.1 DUF945 family protein -
  QOS47_RS05545 - 1135528..1135944 (+) 417 WP_065208058.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22972.07 Da        Isoelectric Point: 7.4128

>NTDB_id=1158787 QOS47_RS05525 WP_045032719.1 1131029..1131628(+) (tfoX) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MTSIKDDYLNYLAKFGSQERRSMFGGTGIFINSAMFAIVTPNSMYIRGGDDLDEKLLNAGCEKFRHIKKSKTATVNYYEI
KNLFLTEQSQCDQLVEQSIAFSCRDKSFKSSESNRRLRDLPNMRLTLERMVKKAGVLDVDTFFDAGAVNVFRRVCEHNGQ
ELDYKLLWIFAGAIHGGHWQLLSEDHKQQLLDEYHQQTH

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1158787 QOS47_RS05525 WP_045032719.1 1131029..1131628(+) (tfoX) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGACGTCAATAAAAGATGATTATTTAAATTATTTAGCTAAATTTGGATCGCAAGAAAGAAGGTCAATGTTTGGTGGTAC
GGGGATTTTTATTAATAGTGCTATGTTTGCCATCGTAACCCCAAACTCAATGTATATTCGTGGAGGGGATGATCTTGATG
AGAAATTACTTAACGCGGGCTGTGAAAAGTTTAGACATATAAAGAAAAGTAAAACCGCAACGGTTAATTATTATGAGATC
AAAAATTTGTTTTTAACGGAACAATCTCAATGTGATCAGCTTGTAGAACAATCCATTGCCTTTTCTTGTCGTGACAAAAG
TTTCAAATCTTCCGAATCAAATCGTCGTTTGCGTGATTTACCTAATATGCGTTTAACACTTGAACGCATGGTAAAAAAAG
CCGGTGTATTGGATGTTGATACGTTTTTTGATGCTGGTGCTGTAAATGTATTTCGTCGTGTGTGTGAACATAATGGCCAA
GAATTAGATTATAAATTATTGTGGATATTTGCGGGTGCTATTCATGGCGGGCATTGGCAGTTATTAAGTGAAGATCATAA
GCAACAATTATTAGATGAATATCATCAACAAACTCATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-101)

TfoX C-terminal domain (TfoX_C)

(114-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

51.579

95.477

0.492
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

51.579

95.477

0.492
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

51.579

95.477

0.492
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

51.579

95.477

0.492
  tfoX Vibrio cholerae strain A1552

51.579

95.477

0.492
  tfoX Vibrio campbellii strain DS40M4

51.63

92.462

0.477
  tfoX Aliivibrio fischeri ES114

48.187

96.985

0.467
  tfoX Vibrio parahaemolyticus RIMD 2210633

49.457

92.462

0.457

Multiple sequence alignment