Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QOS47_RS01725 Genome accession   NZ_OX460909
Coordinates   347540..348115 (+) Length   191 a.a.
NCBI ID   WP_283596941.1    Uniprot ID   -
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 342540..353115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS01715 uvrA 343010..345838 (-) 2829 WP_283596940.1 excinuclease ABC subunit UvrA -
  QOS47_RS01720 galU 345983..346849 (-) 867 WP_045030036.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QOS47_RS01725 ssb 347540..348115 (+) 576 WP_283596941.1 single-stranded DNA-binding protein Machinery gene
  QOS47_RS01730 - 348259..349728 (+) 1470 WP_107188179.1 phosphoethanolamine transferase -
  QOS47_RS01735 - 349745..350659 (-) 915 WP_283596943.1 LysR family transcriptional regulator -
  QOS47_RS01740 csrD 350799..352733 (+) 1935 WP_283596944.1 RNase E specificity factor CsrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21215.33 Da        Isoelectric Point: 5.1976

>NTDB_id=1158770 QOS47_RS01725 WP_283596941.1 347540..348115(+) (ssb) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MASRGVNKVILIGNLGNDPEIRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRNGGQGAPMGGQQQQQNQGNWGQPQQPAAAPQQNYAPQQPQQPQ
QHQQAPQQSAPQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1158770 QOS47_RS01725 WP_283596941.1 347540..348115(+) (ssb) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGGCCAGTCGTGGCGTAAATAAAGTTATTCTAATCGGTAACTTAGGAAATGATCCAGAAATTCGTTACATGCCGAGCGG
TGGTGCAGTAGCTAACATTACTATTGCAACCTCTGAGTCTTGGCGTGATAAAGCTACCGGTGAGCAACGTGAAAAAACGG
AATGGCATCGTGTAGCATTGTTTGGGAAATTGGCAGAAGTCGCTGGTGAGTACCTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAATTACAAACACGTAAGTGGCAAAACCAGCAAGGCCAAGATCAATACACTACGGAAGTGGTTGTGCAAGGTTT
TAACGGTGTGATGCAAATGCTAGGTGGCCGTAATGGTGGCCAAGGTGCGCCTATGGGTGGTCAACAACAACAGCAGAATC
AAGGAAACTGGGGTCAACCTCAACAACCTGCTGCTGCGCCACAGCAAAACTATGCACCACAACAGCCACAGCAGCCACAG
CAACATCAGCAAGCACCGCAGCAGTCTGCTCCACAGCAACCGCAGCAACAATATAATGAGCCACCAATGGATTTTGACGA
CGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.13

100

0.759
  ssb Glaesserella parasuis strain SC1401

52.91

98.953

0.524
  ssb Neisseria meningitidis MC58

44.56

100

0.45
  ssb Neisseria gonorrhoeae MS11

43.85

97.906

0.429

Multiple sequence alignment