Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   KJP56_RS19605 Genome accession   NZ_OX419652
Coordinates   3661385..3662542 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis isolate NRS6131     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3656385..3667542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS19575 (NRS6131_19385) yvyF 3656639..3657058 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP56_RS19580 (NRS6131_19390) comFC 3657131..3657853 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  KJP56_RS19585 (NRS6131_19395) comFB 3657817..3658113 (-) 297 WP_014478130.1 late competence protein ComFB -
  KJP56_RS19590 (NRS6131_19400) comFA 3658173..3659564 (-) 1392 WP_213419174.1 ATP-dependent helicase ComFA Machinery gene
  KJP56_RS19595 (NRS6131_19405) fakBA 3659670..3660515 (-) 846 WP_003227986.1 DegV family protein -
  KJP56_RS19600 (NRS6131_19410) degU 3660613..3661302 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP56_RS19605 (NRS6131_19415) degS 3661385..3662542 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP56_RS19610 (NRS6131_19420) yvyE 3662759..3663412 (+) 654 WP_003227979.1 YigZ family protein -
  KJP56_RS19615 (NRS6131_19425) tagV 3663412..3664587 (+) 1176 WP_213419173.1 LCP family protein -
  KJP56_RS19620 (NRS6131_19430) tagO 3664660..3665736 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  KJP56_RS19625 (NRS6131_19435) tuaH 3665881..3667074 (-) 1194 WP_213419285.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=1158099 KJP56_RS19605 WP_003227983.1 3661385..3662542(-) (degS) [Bacillus subtilis isolate NRS6131]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1158099 KJP56_RS19605 WP_003227983.1 3661385..3662542(-) (degS) [Bacillus subtilis isolate NRS6131]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGGTCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment