Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP56_RS19600 Genome accession   NZ_OX419652
Coordinates   3660613..3661302 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6131     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3655613..3666302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS19565 (NRS6131_19375) flgN 3655794..3656276 (-) 483 WP_015714799.1 flagellar protein FlgN -
  KJP56_RS19570 (NRS6131_19380) flgM 3656292..3656558 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP56_RS19575 (NRS6131_19385) yvyF 3656639..3657058 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP56_RS19580 (NRS6131_19390) comFC 3657131..3657853 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  KJP56_RS19585 (NRS6131_19395) comFB 3657817..3658113 (-) 297 WP_014478130.1 late competence protein ComFB -
  KJP56_RS19590 (NRS6131_19400) comFA 3658173..3659564 (-) 1392 WP_213419174.1 ATP-dependent helicase ComFA Machinery gene
  KJP56_RS19595 (NRS6131_19405) fakBA 3659670..3660515 (-) 846 WP_003227986.1 DegV family protein -
  KJP56_RS19600 (NRS6131_19410) degU 3660613..3661302 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP56_RS19605 (NRS6131_19415) degS 3661385..3662542 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP56_RS19610 (NRS6131_19420) yvyE 3662759..3663412 (+) 654 WP_003227979.1 YigZ family protein -
  KJP56_RS19615 (NRS6131_19425) tagV 3663412..3664587 (+) 1176 WP_213419173.1 LCP family protein -
  KJP56_RS19620 (NRS6131_19430) tagO 3664660..3665736 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1158098 KJP56_RS19600 WP_003219701.1 3660613..3661302(-) (degU) [Bacillus subtilis isolate NRS6131]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1158098 KJP56_RS19600 WP_003219701.1 3660613..3661302(-) (degU) [Bacillus subtilis isolate NRS6131]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment