Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KJP56_RS19580 Genome accession   NZ_OX419652
Coordinates   3657131..3657853 (-) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652131..3662853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS19545 (NRS6131_19355) fliW 3652271..3652702 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  KJP56_RS19550 (NRS6131_19360) yviE 3652723..3653298 (-) 576 WP_101501514.1 DUF6470 family protein -
  KJP56_RS19555 (NRS6131_19365) flgL 3653345..3654241 (-) 897 WP_101501515.1 flagellar hook-associated protein FlgL -
  KJP56_RS19560 (NRS6131_19370) flgK 3654252..3655775 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  KJP56_RS19565 (NRS6131_19375) flgN 3655794..3656276 (-) 483 WP_015714799.1 flagellar protein FlgN -
  KJP56_RS19570 (NRS6131_19380) flgM 3656292..3656558 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP56_RS19575 (NRS6131_19385) yvyF 3656639..3657058 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP56_RS19580 (NRS6131_19390) comFC 3657131..3657853 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  KJP56_RS19585 (NRS6131_19395) comFB 3657817..3658113 (-) 297 WP_014478130.1 late competence protein ComFB -
  KJP56_RS19590 (NRS6131_19400) comFA 3658173..3659564 (-) 1392 WP_213419174.1 ATP-dependent helicase ComFA Machinery gene
  KJP56_RS19595 (NRS6131_19405) fakBA 3659670..3660515 (-) 846 WP_003227986.1 DegV family protein -
  KJP56_RS19600 (NRS6131_19410) degU 3660613..3661302 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP56_RS19605 (NRS6131_19415) degS 3661385..3662542 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=1158096 KJP56_RS19580 WP_033884179.1 3657131..3657853(-) (comFC) [Bacillus subtilis isolate NRS6131]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1158096 KJP56_RS19580 WP_033884179.1 3657131..3657853(-) (comFC) [Bacillus subtilis isolate NRS6131]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment