Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KJP56_RS19590 Genome accession   NZ_OX419652
Coordinates   3658173..3659564 (-) Length   463 a.a.
NCBI ID   WP_213419174.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6131     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653173..3664564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS19555 (NRS6131_19365) flgL 3653345..3654241 (-) 897 WP_101501515.1 flagellar hook-associated protein FlgL -
  KJP56_RS19560 (NRS6131_19370) flgK 3654252..3655775 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  KJP56_RS19565 (NRS6131_19375) flgN 3655794..3656276 (-) 483 WP_015714799.1 flagellar protein FlgN -
  KJP56_RS19570 (NRS6131_19380) flgM 3656292..3656558 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP56_RS19575 (NRS6131_19385) yvyF 3656639..3657058 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP56_RS19580 (NRS6131_19390) comFC 3657131..3657853 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  KJP56_RS19585 (NRS6131_19395) comFB 3657817..3658113 (-) 297 WP_014478130.1 late competence protein ComFB -
  KJP56_RS19590 (NRS6131_19400) comFA 3658173..3659564 (-) 1392 WP_213419174.1 ATP-dependent helicase ComFA Machinery gene
  KJP56_RS19595 (NRS6131_19405) fakBA 3659670..3660515 (-) 846 WP_003227986.1 DegV family protein -
  KJP56_RS19600 (NRS6131_19410) degU 3660613..3661302 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP56_RS19605 (NRS6131_19415) degS 3661385..3662542 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP56_RS19610 (NRS6131_19420) yvyE 3662759..3663412 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52515.44 Da        Isoelectric Point: 9.7976

>NTDB_id=1158097 KJP56_RS19590 WP_213419174.1 3658173..3659564(-) (comFA) [Bacillus subtilis isolate NRS6131]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEDLLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISGLYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1158097 KJP56_RS19590 WP_213419174.1 3658173..3659564(-) (comFA) [Bacillus subtilis isolate NRS6131]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGATCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGGGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACTGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.624

100

0.976

Multiple sequence alignment