Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KJP45_RS20525 Genome accession   NZ_OX419578
Coordinates   3984505..3985023 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate NRS6128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3979505..3990023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS20495 (NRS6128_20250) yyaJ 3980010..3981365 (+) 1356 WP_014481501.1 MFS transporter -
  KJP45_RS20500 (NRS6128_20255) maa 3981399..3981953 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  KJP45_RS20505 (NRS6128_20260) yyaH 3981969..3982349 (-) 381 WP_213414713.1 VOC family protein -
  KJP45_RS20510 (NRS6128_20265) ccpB 3982405..3983340 (-) 936 WP_213414712.1 LacI family DNA-binding transcriptional regulator -
  KJP45_RS20515 (NRS6128_20270) xth 3983399..3984157 (-) 759 WP_032722827.1 exodeoxyribonuclease III -
  KJP45_RS20520 (NRS6128_20275) rpsR 3984222..3984461 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  KJP45_RS20525 (NRS6128_20280) ssbA 3984505..3985023 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  KJP45_RS20530 (NRS6128_20285) rpsF 3985064..3985351 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  KJP45_RS20535 (NRS6128_20290) ychF 3985462..3986562 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  KJP45_RS20540 (NRS6128_20295) yyaE 3986689..3988692 (-) 2004 WP_213414711.1 molybdopterin-dependent oxidoreductase -
  KJP45_RS20545 (NRS6128_20300) yyzM 3988743..3988949 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1157863 KJP45_RS20525 WP_003219228.1 3984505..3985023(-) (ssbA) [Bacillus subtilis isolate NRS6128]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1157863 KJP45_RS20525 WP_003219228.1 3984505..3985023(-) (ssbA) [Bacillus subtilis isolate NRS6128]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment