Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KJP47_RS22015 Genome accession   NZ_OX419577
Coordinates   4134712..4135230 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate NRS6120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4129712..4140230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS21985 (NRS6120_22635) yyaJ 4130216..4131571 (+) 1356 WP_187957491.1 MFS transporter -
  KJP47_RS21990 (NRS6120_22640) maa 4131605..4132159 (-) 555 WP_072173956.1 sugar O-acetyltransferase -
  KJP47_RS21995 (NRS6120_22645) yyaH 4132175..4132555 (-) 381 WP_213383773.1 VOC family protein -
  KJP47_RS22000 (NRS6120_22650) ccpB 4132611..4133546 (-) 936 WP_213383772.1 LacI family DNA-binding transcriptional regulator -
  KJP47_RS22005 (NRS6120_22655) xth 4133606..4134364 (-) 759 WP_213383771.1 exodeoxyribonuclease III -
  KJP47_RS22010 (NRS6120_22660) rpsR 4134429..4134668 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  KJP47_RS22015 (NRS6120_22665) ssbA 4134712..4135230 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  KJP47_RS22020 (NRS6120_22670) rpsF 4135271..4135558 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  KJP47_RS22025 (NRS6120_22675) ychF 4135669..4136769 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  KJP47_RS22030 (NRS6120_22680) yyaE 4136896..4138899 (-) 2004 WP_213383770.1 molybdopterin-dependent oxidoreductase -
  KJP47_RS22035 (NRS6120_22685) yyzM 4138950..4139156 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1157785 KJP47_RS22015 WP_003219228.1 4134712..4135230(-) (ssbA) [Bacillus subtilis isolate NRS6120]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1157785 KJP47_RS22015 WP_003219228.1 4134712..4135230(-) (ssbA) [Bacillus subtilis isolate NRS6120]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment