Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KJP57_RS22745 Genome accession   NZ_OX419573
Coordinates   4318156..4318674 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate NRS6085     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4313156..4323674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS22715 (NRS6085_22620) yyaJ 4313661..4315016 (+) 1356 WP_213407879.1 MFS transporter -
  KJP57_RS22720 (NRS6085_22625) maa 4315050..4315604 (-) 555 WP_213407880.1 sugar O-acetyltransferase -
  KJP57_RS22725 (NRS6085_22630) yyaH 4315620..4316000 (-) 381 WP_029726089.1 VOC family protein -
  KJP57_RS22730 (NRS6085_22635) ccpB 4316056..4316991 (-) 936 WP_213407881.1 LacI family DNA-binding transcriptional regulator -
  KJP57_RS22735 (NRS6085_22640) xth 4317050..4317808 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  KJP57_RS22740 (NRS6085_22645) rpsR 4317873..4318112 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  KJP57_RS22745 (NRS6085_22650) ssbA 4318156..4318674 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  KJP57_RS22750 (NRS6085_22655) rpsF 4318715..4319002 (-) 288 WP_024571351.1 30S ribosomal protein S6 -
  KJP57_RS22755 (NRS6085_22660) ychF 4319113..4320213 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  KJP57_RS22760 (NRS6085_22665) yyaE 4320340..4322343 (-) 2004 WP_213407882.1 molybdopterin-dependent oxidoreductase -
  KJP57_RS22765 (NRS6085_22670) yyzM 4322394..4322600 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1157540 KJP57_RS22745 WP_003219228.1 4318156..4318674(-) (ssbA) [Bacillus subtilis isolate NRS6085]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1157540 KJP57_RS22745 WP_003219228.1 4318156..4318674(-) (ssbA) [Bacillus subtilis isolate NRS6085]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment