Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N018_RS03145 Genome accession   NZ_CP007014
Coordinates   661240..661809 (+) Length   189 a.a.
NCBI ID   WP_024646123.1    Uniprot ID   W0MR56
Organism   Pseudomonas syringae CC1557     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 656240..666809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N018_RS03130 (N018_03160) bfr 656314..656778 (+) 465 WP_002555461.1 bacterioferritin -
  N018_RS03135 (N018_03165) uvrA 656872..659706 (-) 2835 WP_025388813.1 excinuclease ABC subunit UvrA -
  N018_RS03140 (N018_03170) - 659836..661230 (+) 1395 WP_024646122.1 MFS transporter -
  N018_RS03145 (N018_03175) ssb 661240..661809 (+) 570 WP_024646123.1 single-stranded DNA-binding protein Machinery gene
  N018_RS03150 (N018_03180) - 661944..662243 (-) 300 WP_025388814.1 hypothetical protein -
  N018_RS03155 (N018_03185) - 662341..663447 (-) 1107 WP_025388815.1 endo-1,4-beta-xylanase -
  N018_RS03160 (N018_03190) - 663447..664190 (-) 744 WP_025388816.1 inositol monophosphatase family protein -
  N018_RS03165 (N018_03195) - 664187..664948 (-) 762 WP_025388817.1 glycerophosphoryl diester phosphodiesterase -
  N018_RS03170 (N018_03200) - 664955..666061 (-) 1107 WP_025388818.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20988.13 Da        Isoelectric Point: 5.9404

>NTDB_id=115714 N018_RS03145 WP_024646123.1 661240..661809(+) (ssb) [Pseudomonas syringae CC1557]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=115714 N018_RS03145 WP_024646123.1 661240..661809(+) (ssb) [Pseudomonas syringae CC1557]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGACCGGCCAGAAAGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTATATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGTGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGTCCACAGCAATCGGCGCCGCAGCAGTCCGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAACGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTTGATAGCTTTGATGACGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0MR56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.729

100

0.566
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.481
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444

Multiple sequence alignment