Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C163_RS07145 Genome accession   NZ_CP007012
Coordinates   1589231..1591447 (+) Length   738 a.a.
NCBI ID   WP_025338206.1    Uniprot ID   A0AAI8ARE8
Organism   Pseudomonas sp. FGI182     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584231..1596447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C163_RS07125 (C163_07220) - 1586096..1586719 (+) 624 WP_013971559.1 glutathione S-transferase -
  C163_RS07130 (C163_07225) - 1586864..1587796 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  C163_RS07135 (C163_07230) - 1587793..1588572 (+) 780 WP_003260104.1 ABC transporter permease -
  C163_RS07140 (C163_07235) - 1588582..1589088 (-) 507 Protein_1397 DUF2062 domain-containing protein -
  C163_RS07145 (C163_07240) comA 1589231..1591447 (+) 2217 WP_025338206.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C163_RS07150 (C163_07245) exbB 1591778..1592413 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C163_RS07155 (C163_07250) - 1592410..1592844 (+) 435 WP_025338207.1 biopolymer transporter ExbD -
  C163_RS07160 (C163_07255) lpxK 1592844..1593845 (+) 1002 WP_025338208.1 tetraacyldisaccharide 4'-kinase -
  C163_RS07165 (C163_07260) - 1593890..1594075 (+) 186 WP_011532874.1 Trm112 family protein -
  C163_RS07170 (C163_07265) kdsB 1594072..1594836 (+) 765 WP_025338209.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C163_RS07175 (C163_07270) - 1594836..1595300 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  C163_RS07180 (C163_07275) murB 1595297..1596316 (+) 1020 WP_025338210.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79533.27 Da        Isoelectric Point: 9.6854

>NTDB_id=115694 C163_RS07145 WP_025338206.1 1589231..1591447(+) (comA) [Pseudomonas sp. FGI182]
MRTGVFALALGLLCLGFLPALPSVGWLVLLAVVGGLGLFTRLWPLGCFLLGLCWACGSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
IAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLDATLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLGYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHHDLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAG
AIMRGLPVERVIGGEVLDDMQLQPCVSGDQWTWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLG
EVESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=115694 C163_RS07145 WP_025338206.1 1589231..1591447(+) (comA) [Pseudomonas sp. FGI182]
ATGCGCACAGGGGTGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGTCGGTGGCCTCGGCCTGTTCACCCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGGCTGTGTT
GGGCCTGCGGGTCTGCGCAACAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTATGGCTTGAGGGT
CGGGTGGTCGGTCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
ATTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCCTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCCGGTGGTGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTCGATGCGACCTTGCCGTTGCTGCTGGCGCTGGTTGCCGTGCTGCTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGGCTATTGCTTCAGTGCCCGCCTGGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCCATCGGTTTGCTACCGGTGCTGCTGGCTACGGGCT
TGCCAGTGAGCCTGAGTGCACCGCTGGCCAACCTTGTTGCGGTGCCTTGGGTCAGCCTGGCGGTACTGCCGTTGGCGTTG
CTGGGGACCTTGCTGCTGCCGCTGGGCGGGGTGGGGGAGGCGCTGCTCTGGCTGGCGGGTGGTCTGCTCGATGTGCTTTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCATTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGCTGCTGGTTTTGATGCCCCGTGGCGTCCCACTGCGCGGGTTGGGTGGCGTGATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACGACCTGCTGTACGACGCCGGGCCGGCCAGGGGGGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGCCTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAAGTGCTGGATGACATGCAACTGCAGCCTTGTGTCAG
TGGCGACCAGTGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTT
GCGGCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCACGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACAGCGGAGCAGGGGGCGCTGCGGTTGGTGTTGGGGAGATTGGGG
GAGGTCGAGAGTGTGCGCCGACAGAGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.527

97.425

0.58
  comA Ralstonia pseudosolanacearum GMI1000

35.197

100

0.375

Multiple sequence alignment