Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C163_RS07150 Genome accession   NZ_CP007012
Coordinates   1591778..1592413 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas sp. FGI182     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586778..1597413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C163_RS07130 (C163_07225) - 1586864..1587796 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  C163_RS07135 (C163_07230) - 1587793..1588572 (+) 780 WP_003260104.1 ABC transporter permease -
  C163_RS07140 (C163_07235) - 1588582..1589088 (-) 507 Protein_1397 DUF2062 domain-containing protein -
  C163_RS07145 (C163_07240) comA 1589231..1591447 (+) 2217 WP_025338206.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C163_RS07150 (C163_07245) exbB 1591778..1592413 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C163_RS07155 (C163_07250) - 1592410..1592844 (+) 435 WP_025338207.1 biopolymer transporter ExbD -
  C163_RS07160 (C163_07255) lpxK 1592844..1593845 (+) 1002 WP_025338208.1 tetraacyldisaccharide 4'-kinase -
  C163_RS07165 (C163_07260) - 1593890..1594075 (+) 186 WP_011532874.1 Trm112 family protein -
  C163_RS07170 (C163_07265) kdsB 1594072..1594836 (+) 765 WP_025338209.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C163_RS07175 (C163_07270) - 1594836..1595300 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  C163_RS07180 (C163_07275) murB 1595297..1596316 (+) 1020 WP_025338210.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=115695 C163_RS07150 WP_016391244.1 1591778..1592413(+) (exbB) [Pseudomonas sp. FGI182]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=115695 C163_RS07150 WP_016391244.1 1591778..1592413(+) (exbB) [Pseudomonas sp. FGI182]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCATCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCTCTGCGCGCCGATTCGCCACTGGGCGAGATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTTGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGTTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGACGAGTTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment