Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C163_RS02445 Genome accession   NZ_CP007012
Coordinates   552849..553394 (+) Length   181 a.a.
NCBI ID   WP_025337494.1    Uniprot ID   A0AAI8FER1
Organism   Pseudomonas sp. FGI182     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 547849..558394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C163_RS02430 (C163_02450) bfr 547881..548345 (+) 465 WP_003257116.1 bacterioferritin -
  C163_RS02435 (C163_02455) uvrA 548481..551315 (-) 2835 WP_025337492.1 excinuclease ABC subunit UvrA -
  C163_RS02440 (C163_02460) - 551445..552839 (+) 1395 WP_025337493.1 MFS transporter -
  C163_RS02445 (C163_02465) ssb 552849..553394 (+) 546 WP_025337494.1 single-stranded DNA-binding protein Machinery gene
  C163_RS02450 (C163_02470) - 553689..555071 (-) 1383 WP_025337495.1 PLP-dependent aminotransferase family protein -
  C163_RS02455 (C163_02475) - 555271..556056 (+) 786 WP_025337496.1 TSUP family transporter -
  C163_RS02460 (C163_02480) - 556078..556839 (+) 762 WP_025337497.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20028.15 Da        Isoelectric Point: 5.9286

>NTDB_id=115688 C163_RS02445 WP_025337494.1 552849..553394(+) (ssb) [Pseudomonas sp. FGI182]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAPRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=115688 C163_RS02445 WP_025337494.1 552849..553394(+) (ssb) [Pseudomonas sp. FGI182]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCCCCGCCACGTCAACAGGCCCCGCGCCCGCAGCAGGCCCCTCAGCGCCCGGCG
CCACAGCAGCCAGCCCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.15

100

0.58
  ssb Neisseria gonorrhoeae MS11

49.189

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.087

100

0.486

Multiple sequence alignment