Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KJP72_RS22155 Genome accession   NZ_OX419557
Coordinates   4222517..4223035 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate NRS6186     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4217517..4228035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP72_RS22125 (NRS6186_21950) yyaJ 4218021..4219376 (+) 1356 WP_029318525.1 MFS transporter -
  KJP72_RS22130 (NRS6186_21955) maa 4219410..4219964 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  KJP72_RS22135 (NRS6186_21960) yyaH 4219982..4220362 (-) 381 WP_128422534.1 VOC family protein -
  KJP72_RS22140 (NRS6186_21965) ccpB 4220418..4221353 (-) 936 WP_048654830.1 transcriptional regulator CcpB -
  KJP72_RS22145 (NRS6186_21970) xth 4221412..4222170 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  KJP72_RS22150 (NRS6186_21975) rpsR 4222234..4222473 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  KJP72_RS22155 (NRS6186_21980) ssbA 4222517..4223035 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  KJP72_RS22160 (NRS6186_21985) rpsF 4223076..4223363 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  KJP72_RS22165 (NRS6186_21990) ychF 4223474..4224574 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  KJP72_RS22170 (NRS6186_21995) yyaE 4224701..4226704 (-) 2004 WP_029726086.1 molybdopterin-dependent oxidoreductase -
  KJP72_RS22175 (NRS6186_22000) yyzM 4226755..4226961 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1156795 KJP72_RS22155 WP_003219228.1 4222517..4223035(-) (ssbA) [Bacillus subtilis isolate NRS6186]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1156795 KJP72_RS22155 WP_003219228.1 4222517..4223035(-) (ssbA) [Bacillus subtilis isolate NRS6186]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment