Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KJP77_RS22050 Genome accession   NZ_OX419554
Coordinates   4207433..4207951 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate NRS6160     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4202433..4212951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP77_RS22020 (NRS6160_21745) yyaJ 4202939..4204294 (+) 1356 WP_003226851.1 MFS transporter -
  KJP77_RS22025 (NRS6160_21750) maa 4204328..4204882 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  KJP77_RS22030 (NRS6160_21755) yyaH 4204900..4205280 (-) 381 WP_029726089.1 VOC family protein -
  KJP77_RS22035 (NRS6160_21760) ccpB 4205336..4206271 (-) 936 WP_003226845.1 transcriptional regulator CcpB -
  KJP77_RS22040 (NRS6160_21765) xth 4206330..4207088 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  KJP77_RS22045 (NRS6160_21770) rpsR 4207150..4207389 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  KJP77_RS22050 (NRS6160_21775) ssbA 4207433..4207951 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  KJP77_RS22055 (NRS6160_21780) rpsF 4207992..4208279 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  KJP77_RS22060 (NRS6160_21785) ychF 4208390..4209490 (-) 1101 WP_088467483.1 redox-regulated ATPase YchF -
  KJP77_RS22065 (NRS6160_21790) yyaE 4209617..4211620 (-) 2004 WP_032676927.1 molybdopterin-dependent oxidoreductase -
  KJP77_RS22070 (NRS6160_21795) yyzM 4211671..4211877 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1156637 KJP77_RS22050 WP_003219228.1 4207433..4207951(-) (ssbA) [Bacillus subtilis isolate NRS6160]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1156637 KJP77_RS22050 WP_003219228.1 4207433..4207951(-) (ssbA) [Bacillus subtilis isolate NRS6160]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment