Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   QMX76_RS11100 Genome accession   NZ_OX411212
Coordinates   2232895..2233482 (-) Length   195 a.a.
NCBI ID   WP_005428539.1    Uniprot ID   A0AAQ2XWF3
Organism   Vibrio campbellii isolate BF5_0283     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2227895..2238482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS11080 - 2228042..2229304 (-) 1263 WP_282249373.1 DUF945 family protein -
  QMX76_RS11085 - 2229490..2231430 (+) 1941 WP_228174041.1 ATP-binding protein -
  QMX76_RS11090 - 2231427..2231924 (+) 498 WP_228174042.1 response regulator -
  QMX76_RS11095 - 2232132..2232680 (+) 549 WP_005428519.1 hypothetical protein -
  QMX76_RS11100 tfoX 2232895..2233482 (-) 588 WP_005428539.1 TfoX/Sxy family DNA transformation protein Regulator
  QMX76_RS11105 - 2233853..2234773 (+) 921 WP_134976602.1 HDOD domain-containing protein -
  QMX76_RS11110 - 2234881..2235786 (+) 906 WP_228174107.1 lysine exporter LysO family protein -
  QMX76_RS11115 - 2235996..2236508 (+) 513 WP_134976604.1 hypothetical protein -
  QMX76_RS11120 panP 2236630..2238276 (+) 1647 WP_228174043.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22337.57 Da        Isoelectric Point: 6.4656

>NTDB_id=1156283 QMX76_RS11100 WP_005428539.1 2232895..2233482(-) (tfoX) [Vibrio campbellii isolate BF5_0283]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TELFDSGFAGLDELLQKSINCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1156283 QMX76_RS11100 WP_005428539.1 2232895..2233482(-) (tfoX) [Vibrio campbellii isolate BF5_0283]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTCGGCGGTAT
TGGTTTATTCAGCAACGACGCAATGTTTGCTCTGGTAAGTAACGACTGCTGTTACTTGCGCGGTGGCAATGGCCTCGATG
AAGAGTTTACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACGGTAAATTATTACGATGTA
ACAGAATTGTTCGATTCCGGTTTTGCTGGGTTGGATGAGCTGCTACAAAAATCAATTAATTGTTCTATCAAGGAACGCAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCGAATATGCAGCTAACGCTAGAGCGTATGGTAAAGAAAG
CGGGTATTGATGACGTAGACACGTTTTTGGAGCTTGGCCCAGTAGAAGTCTTCAACAAAGTAAGAGTGGCATACGGCAGT
GATGTAGACGTTAAGCTGCTTTGGAAGTTTGCTGGTGCGATTGATGGTATCCATTGGAAACTGATCCAAGAACCACGCAA
GAAGCAGCTACTGGCTATGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-99)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

100

100

1
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579

Multiple sequence alignment