Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ALTBGP6_RS01015 Genome accession   NZ_OX359237
Coordinates   223754..224338 (+) Length   194 a.a.
NCBI ID   WP_014947881.1    Uniprot ID   A0AB32ZTF8
Organism   Alteromonas macleodii isolate Alteromonas macleodii EZ55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 218754..229338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALTBGP6_RS01000 (EZ55_00204) - 219379..220434 (+) 1056 WP_014947878.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  ALTBGP6_RS01005 (EZ55_00205) galK 220427..221566 (+) 1140 WP_014947879.1 galactokinase -
  ALTBGP6_RS01010 (EZ55_00206) - 221924..223486 (+) 1563 WP_014975374.1 sodium/sugar symporter -
  ALTBGP6_RS01015 (EZ55_00207) ssb 223754..224338 (+) 585 WP_014947881.1 single-stranded DNA-binding protein Machinery gene
  ALTBGP6_RS01020 (EZ55_00208) - 224547..225500 (+) 954 WP_156085759.1 hypothetical protein -
  ALTBGP6_RS01025 (EZ55_00209) - 225641..226966 (+) 1326 WP_014947883.1 dienelactone hydrolase family protein -
  ALTBGP6_RS01030 (EZ55_00210) - 227045..229174 (-) 2130 WP_014947884.1 alpha-galactosidase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21128.03 Da        Isoelectric Point: 4.9658

>NTDB_id=1155722 ALTBGP6_RS01015 WP_014947881.1 223754..224338(+) (ssb) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1155722 ALTBGP6_RS01015 WP_014947881.1 223754..224338(+) (ssb) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGCGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56

100

0.577
  ssb Vibrio cholerae strain A1552

54.5

100

0.562
  ssb Neisseria meningitidis MC58

46.354

98.969

0.459
  ssb Neisseria gonorrhoeae MS11

46.354

98.969

0.459

Multiple sequence alignment