Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QNH80_RS10405 Genome accession   NZ_OX352996
Coordinates   2140325..2140990 (+) Length   221 a.a.
NCBI ID   WP_024382697.1    Uniprot ID   A0A0Z8HE24
Organism   Streptococcus suis isolate 861160_dhsdS     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2135325..2145990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH80_RS10380 - 2135536..2136936 (+) 1401 WP_074389960.1 Cof-type HAD-IIB family hydrolase -
  QNH80_RS10385 - 2136938..2137309 (+) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  QNH80_RS10390 cysK 2137335..2138261 (-) 927 WP_074389961.1 cysteine synthase A -
  QNH80_RS10395 - 2138351..2138983 (-) 633 WP_171840851.1 YigZ family protein -
  QNH80_RS10400 comFA/cflA 2139040..2140332 (+) 1293 WP_074389963.1 DEAD/DEAH box helicase Machinery gene
  QNH80_RS10405 comFC/cflB 2140325..2140990 (+) 666 WP_024382697.1 ComF family protein Machinery gene
  QNH80_RS10410 raiA 2141067..2141609 (+) 543 WP_004194117.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25720.54 Da        Isoelectric Point: 8.4541

>NTDB_id=1155655 QNH80_RS10405 WP_024382697.1 2140325..2140990(+) (comFC/cflB) [Streptococcus suis isolate 861160_dhsdS]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1155655 QNH80_RS10405 WP_024382697.1 2140325..2140990(+) (comFC/cflB) [Streptococcus suis isolate 861160_dhsdS]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8HE24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484

Multiple sequence alignment