NTDB

Detailed information

Bioinformatically predicted

Overview
Genomic Context
Sequence
Domains
Secondary structure
3D structure
Transmembrane helices
Similar proteins

Overview

Name	comFC/cflB	Type	Machinery gene
Locus tag	QNH65_RS10410	Genome accession	NZ_OX352940
Coordinates	2142085..2142750 (+)	Length	221 a.a.
NCBI ID	WP_024382697.1	Uniprot ID	A0A0Z8HE24
Organism	Streptococcus suis isolate 861160_LM_A
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2137085..2147750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH65_RS10385	-	2137296..2138696 (+)	1401	WP_074389960.1	Cof-type HAD-IIB family hydrolase	-
QNH65_RS10390	-	2138698..2139069 (+)	372	WP_024394815.1	S1 RNA-binding domain-containing protein	-
QNH65_RS10395	cysK	2139095..2140021 (-)	927	WP_074389961.1	cysteine synthase A	-
QNH65_RS10400	-	2140111..2140743 (-)	633	WP_171840851.1	YigZ family protein	-
QNH65_RS10405	comFA/cflA	2140800..2142092 (+)	1293	WP_074389963.1	DEAD/DEAH box helicase	Machinery gene
QNH65_RS10410	comFC/cflB	2142085..2142750 (+)	666	WP_024382697.1	ComF family protein	Machinery gene
QNH65_RS10415	raiA	2142827..2143369 (+)	543	WP_004194117.1	ribosome-associated translation inhibitor RaiA	-

Sequence

Protein

Download Length: 221 a.a. Molecular weight: 25720.54 Da Isoelectric Point: 8.4541

                                >NTDB_id=1155493 QNH65_RS10410 WP_024382697.1 2142085..2142750(+) (comFC/cflB) [Streptococcus suis isolate 861160_LM_A]

MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN

QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS

SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide

Download Length: 666 bp

                                >NTDB_id=1155493 QNH65_RS10410 WP_024382697.1 2142085..2142750(+) (comFC/cflB) [Streptococcus suis isolate 861160_LM_A]

ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA

ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG

AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT

CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG

AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA

ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA

TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT

ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA

TCAAAACATTTTCACTAACACGATAA

Domains

No domain identified.

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0Z8HE24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC/cflB	Streptococcus mitis SK321	49.083	98.643	0.484
comFC/cflB	Streptococcus pneumoniae TIGR4	49.083	98.643	0.484
comFC/cflB	Streptococcus pneumoniae Rx1	49.083	98.643	0.484
comFC/cflB	Streptococcus pneumoniae D39	49.083	98.643	0.484
comFC/cflB	Streptococcus pneumoniae R6	49.083	98.643	0.484
comFC/cflB	Streptococcus mitis NCTC 12261	49.083	98.643	0.484

Detailed information NTG1155493