Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OM978_RS20780 Genome accession   NZ_OX352320
Coordinates   4485128..4485790 (-) Length   220 a.a.
NCBI ID   WP_233010844.1    Uniprot ID   -
Organism   Rheinheimera sp. MM224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4480128..4490790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM978_RS20760 (JAMGFMIE_04174) - 4481141..4482319 (-) 1179 WP_264344326.1 MFS transporter -
  OM978_RS20765 (JAMGFMIE_04175) - 4482418..4483344 (+) 927 WP_264344327.1 LysR family transcriptional regulator -
  OM978_RS20770 (JAMGFMIE_04176) - 4483392..4484327 (-) 936 WP_264344328.1 alpha/beta fold hydrolase -
  OM978_RS20775 (JAMGFMIE_04177) - 4484454..4485050 (+) 597 WP_264344329.1 CGNR zinc finger domain-containing protein -
  OM978_RS20780 (JAMGFMIE_04178) ssb 4485128..4485790 (-) 663 WP_233010844.1 single-stranded DNA-binding protein Machinery gene
  OM978_RS20785 (JAMGFMIE_04179) - 4485802..4487169 (-) 1368 WP_264344330.1 MFS transporter -
  OM978_RS20790 (JAMGFMIE_04180) - 4487239..4488366 (-) 1128 WP_264344331.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23625.31 Da        Isoelectric Point: 5.9579

>NTDB_id=1155323 OM978_RS20780 WP_233010844.1 4485128..4485790(-) (ssb) [Rheinheimera sp. MM224]
MARGINKVILIGNLGTDPEVRYMPTGGAVANLTIATSESWTDKTTNEKKENTEWHRVVIYQRLAEIAGEYLRKGSKVYIE
GRLRTRKWQDQQGVERYTTEIIANELQMLDGRGEGQGAGMGQAPAMGGGAPMGNQGGYQQPAAAPQQRMPQAAPAAQGGY
APQAPAAAAPAQGGYQQRPAQGGFQPQGNFNQPQGGFNQAAPQQRGPMEPPIDFDDDIPF

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1155323 OM978_RS20780 WP_233010844.1 4485128..4485790(-) (ssb) [Rheinheimera sp. MM224]
ATGGCTCGTGGAATTAATAAAGTAATCCTGATTGGTAACTTAGGTACCGATCCGGAAGTCCGTTATATGCCTACAGGTGG
CGCAGTCGCTAACCTGACTATTGCTACCAGCGAGAGCTGGACGGACAAAACCACCAATGAAAAGAAAGAAAATACCGAAT
GGCACCGTGTAGTGATTTATCAGCGTTTAGCTGAAATTGCCGGTGAATATCTGCGTAAAGGCAGCAAGGTCTATATCGAA
GGTCGTTTACGTACCCGTAAGTGGCAGGATCAGCAAGGTGTTGAACGTTACACCACTGAAATCATTGCCAATGAGCTGCA
AATGTTAGACGGCCGTGGTGAAGGTCAAGGCGCTGGCATGGGTCAGGCTCCGGCTATGGGTGGCGGTGCTCCTATGGGTA
ACCAGGGTGGCTATCAACAACCTGCAGCTGCACCACAACAACGTATGCCACAAGCGGCTCCTGCTGCTCAGGGCGGTTAC
GCTCCGCAAGCTCCAGCTGCTGCAGCACCGGCACAAGGTGGTTACCAGCAACGTCCAGCTCAGGGTGGCTTCCAGCCTCA
GGGCAATTTTAACCAGCCACAAGGCGGTTTTAATCAGGCAGCACCACAACAACGTGGCCCAATGGAACCACCAATCGACT
TTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.327

100

0.5
  ssb Glaesserella parasuis strain SC1401

48.416

100

0.486
  ssb Neisseria meningitidis MC58

43.318

98.636

0.427
  ssb Neisseria gonorrhoeae MS11

46.927

81.364

0.382

Multiple sequence alignment