Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ONG87_RS18640 Genome accession   NZ_OX352319
Coordinates   4085537..4086067 (-) Length   176 a.a.
NCBI ID   WP_122475629.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4080537..4091067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS18615 (AHFPHNDE_03702) - 4080759..4081274 (+) 516 WP_264381826.1 DUF3299 domain-containing protein -
  ONG87_RS18620 (AHFPHNDE_03703) - 4081369..4082067 (+) 699 WP_192175885.1 OmpW family protein -
  ONG87_RS18625 (AHFPHNDE_03704) - 4082130..4083059 (-) 930 WP_264381827.1 NAD-dependent epimerase/dehydratase family protein -
  ONG87_RS18630 (AHFPHNDE_03705) - 4083052..4083936 (-) 885 WP_122475625.1 sugar nucleotide-binding protein -
  ONG87_RS18635 (AHFPHNDE_03706) - 4084098..4085234 (-) 1137 WP_264381828.1 acyltransferase -
  ONG87_RS18640 (AHFPHNDE_03707) ssb 4085537..4086067 (-) 531 WP_122475629.1 single-stranded DNA-binding protein Machinery gene
  ONG87_RS18645 (AHFPHNDE_03708) - 4086077..4087471 (-) 1395 WP_192054910.1 MFS transporter -
  ONG87_RS18650 (AHFPHNDE_03709) uvrA 4087637..4090471 (+) 2835 WP_264381829.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19539.66 Da        Isoelectric Point: 5.9314

>NTDB_id=1155296 ONG87_RS18640 WP_122475629.1 4085537..4086067(-) (ssb) [Pseudomonas sp. MM227]
MARGVNKVILVGTCGQDPEVRFLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNNDQQGGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPPAQQQPA
QQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1155296 ONG87_RS18640 WP_122475629.1 4085537..4086067(-) (ssb) [Pseudomonas sp. MM227]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTGGGTACTTGCGGTCAGGATCCTGAGGTCCGTTTCCTGCCCAACGGCAA
TGCGGTCACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGAGCGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCGGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGTATCAAGCGTTACACCACCGAGATCATCGTCGACATGCAGGGCAC
CATGCAGCTGTTGGGCGGCCGTCCGCAGAACAACGACCAGCAGGGCGGCGGTGGCAACAACTACCAGCAGTCGGCACCGG
CCCCACGTCAGCAGGCGCCGCGCCCGCAGCAGTCCGCGCCGCAGCAGCGTTCGGCTCCGCCTGCGCAGCAGCAGCCAGCA
CAGCAGCCGGCTCCGGACTTTGACAGCTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.249

100

0.568
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.511
  ssb Neisseria meningitidis MC58

47.222

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.483

Multiple sequence alignment