Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ONG87_RS17685 Genome accession   NZ_OX352319
Coordinates   3887146..3888498 (+) Length   450 a.a.
NCBI ID   WP_122475311.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3882146..3893498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS17660 (AHFPHNDE_03513) pgeF 3882349..3883086 (-) 738 WP_264381757.1 peptidoglycan editing factor PgeF -
  ONG87_RS17665 (AHFPHNDE_03514) rluD 3883083..3884045 (-) 963 WP_122475306.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ONG87_RS17670 (AHFPHNDE_03515) - 3884196..3885218 (+) 1023 WP_185795218.1 outer membrane protein assembly factor BamD -
  ONG87_RS17675 (AHFPHNDE_03516) - 3885331..3885564 (+) 234 WP_122475309.1 PP0621 family protein -
  ONG87_RS17680 (AHFPHNDE_03517) pilS 3885599..3887149 (+) 1551 WP_192054939.1 PAS domain-containing sensor histidine kinase Regulator
  ONG87_RS17685 (AHFPHNDE_03518) pilR 3887146..3888498 (+) 1353 WP_122475311.1 sigma-54 dependent transcriptional regulator Regulator
  ONG87_RS17690 (AHFPHNDE_03519) thiO 3888794..3889894 (-) 1101 WP_264381758.1 glycine oxidase ThiO -
  ONG87_RS17695 (AHFPHNDE_03520) - 3889915..3890310 (-) 396 WP_264381759.1 type IV pilin protein -
  ONG87_RS17700 (AHFPHNDE_03521) - 3890319..3893414 (-) 3096 WP_264381760.1 pilus assembly protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 50060.59 Da        Isoelectric Point: 5.6476

>NTDB_id=1155294 ONG87_RS17685 WP_122475311.1 3887146..3888498(+) (pilR) [Pseudomonas sp. MM227]
MTMSARQKILIVDDEPDIRELLEITLGRMKLETRSARDVNEAREWLGREPFDLCLTDMRLPDGTGLELVQFIQQRYPHVP
VAMITAFGSLDTAINALKAGAFDFLTKPVDLPRLRELVGTALRMPAPAPVGKEPSIDQRLLGDSPPMLGLRKQIGRLARS
QAPVYISGESGSGKELVARLIHEQGPRADRPFIPVNCGAIPAELMESEFFGHRKGSFTGATEDKPGLFQAANGGTLFLDE
VADLPLTMQVKLLRAIQEKAVRAVGGQTENVVDVRILSATHKDLAAEVAAQRFRQDLYYRLNVIELRVPCLRERREDIPL
LAASVLARLAQGSGLPPAQLTPAALETLKGYRFPGNVRELENMLERAYTLCEDDRIEASDLRLSETAVSVESGEPSLAQV
DNLEDYLESVERKLILQALEETRWNRTAAAQRLNMSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=1155294 ONG87_RS17685 WP_122475311.1 3887146..3888498(+) (pilR) [Pseudomonas sp. MM227]
ATGACTATGAGCGCCAGGCAAAAAATTCTGATCGTGGATGACGAGCCGGACATCCGCGAACTGTTGGAGATCACCCTCGG
CCGCATGAAACTGGAAACCCGCAGCGCACGCGACGTCAACGAGGCCCGCGAATGGCTGGGGCGCGAACCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGTCTTGAGCTGGTTCAGTTCATCCAGCAGCGCTACCCGCATGTGCCG
GTGGCGATGATCACCGCGTTCGGCAGCCTGGACACCGCCATCAATGCGCTCAAGGCCGGCGCCTTCGATTTCCTCACCAA
GCCGGTCGACCTGCCGCGCCTGCGCGAGCTGGTCGGCACCGCGCTGCGCATGCCGGCGCCCGCCCCGGTCGGCAAGGAAC
CGAGCATCGACCAGCGCCTGCTTGGCGATTCGCCACCGATGTTGGGGCTGCGCAAGCAGATCGGCCGGCTGGCACGCAGC
CAGGCGCCGGTCTACATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATTCACGAACAGGGCCCGCG
GGCGGATCGGCCGTTCATTCCGGTCAATTGCGGCGCCATCCCCGCCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCA
AGGGCAGTTTCACCGGTGCCACCGAAGACAAGCCGGGGCTGTTTCAGGCGGCCAATGGCGGCACGCTGTTTCTCGACGAA
GTGGCCGACTTGCCGTTGACCATGCAGGTAAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCCGTGGGCGGGCA
GACCGAAAACGTGGTCGATGTGCGTATTCTGAGCGCGACCCACAAGGACCTCGCAGCCGAGGTGGCGGCGCAGCGTTTTC
GCCAGGACCTTTACTACCGACTCAACGTGATCGAGCTTCGGGTGCCCTGCCTGCGCGAGCGCCGTGAAGACATTCCGCTG
CTGGCTGCCAGTGTGCTGGCACGCCTGGCGCAGGGCAGTGGCCTGCCGCCCGCGCAGTTGACCCCGGCAGCACTGGAAAC
CCTCAAGGGCTACCGCTTTCCCGGCAACGTGCGCGAACTGGAAAACATGCTCGAACGGGCCTACACCCTGTGCGAAGACG
ATCGCATCGAGGCGAGCGACCTGCGCCTGAGCGAAACGGCAGTCAGCGTGGAGTCCGGCGAACCCAGCCTGGCCCAGGTC
GACAACCTGGAAGACTACCTGGAAAGCGTCGAGCGCAAGCTCATCCTGCAAGCGCTGGAAGAAACCCGCTGGAACCGCAC
GGCAGCAGCGCAGCGGCTGAACATGTCGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(407-447)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.821

99.111

0.791
  pilR Acinetobacter baumannii strain A118

49.673

100

0.507
  luxO Vibrio cholerae strain A1552

37.698

98.444

0.371

Multiple sequence alignment