Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ONG87_RS17680 Genome accession   NZ_OX352319
Coordinates   3885599..3887149 (+) Length   516 a.a.
NCBI ID   WP_192054939.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3880599..3892149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS17660 (AHFPHNDE_03513) pgeF 3882349..3883086 (-) 738 WP_264381757.1 peptidoglycan editing factor PgeF -
  ONG87_RS17665 (AHFPHNDE_03514) rluD 3883083..3884045 (-) 963 WP_122475306.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ONG87_RS17670 (AHFPHNDE_03515) - 3884196..3885218 (+) 1023 WP_185795218.1 outer membrane protein assembly factor BamD -
  ONG87_RS17675 (AHFPHNDE_03516) - 3885331..3885564 (+) 234 WP_122475309.1 PP0621 family protein -
  ONG87_RS17680 (AHFPHNDE_03517) pilS 3885599..3887149 (+) 1551 WP_192054939.1 PAS domain-containing sensor histidine kinase Regulator
  ONG87_RS17685 (AHFPHNDE_03518) pilR 3887146..3888498 (+) 1353 WP_122475311.1 sigma-54 dependent transcriptional regulator Regulator
  ONG87_RS17690 (AHFPHNDE_03519) thiO 3888794..3889894 (-) 1101 WP_264381758.1 glycine oxidase ThiO -
  ONG87_RS17695 (AHFPHNDE_03520) - 3889915..3890310 (-) 396 WP_264381759.1 type IV pilin protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 57071.12 Da        Isoelectric Point: 8.1528

>NTDB_id=1155293 ONG87_RS17680 WP_192054939.1 3885599..3887149(+) (pilS) [Pseudomonas sp. MM227]
MLRLYHLYRLTIGLSLVLLISSNMDNRLLEVADGELFRAGSWLYLILNILVVVLMGNPRRVLPVFSLATADVIMLAGLFY
AGGGTPSGIGNLMIASVAMGNLLLRNRLGLLIAALATIGIIYLTFYLSISRPTAANDYLQASTLGVLCFAVWFVVQGLSR
LLRTSENLAEQRASDVTSLEALNALILQRMRTGILVLDTELRVQLANQGALGLFGRMTLNGELIAVHSPDLIERLLQWQT
NPALRVKSLKFSPTGPSIQASFIALRRGGEQQQTLVFLEDLSQIAQQAQQLKLAALGRLTASIAHEIRNPLGAISHAGQL
LQESEALPVADRRLTQIIQDQCKRMNLIIENVLQLSRRRPSAPHPLDLKAWLENFVSDFRTTARPGQQLHMYVSDGTLET
RMDANQLTQVLNNLVENGLRYSAQQQGRAQVWLNLFVEPTDGLPILEVLDDGPGFAADQLQHMFEPFFTTESNGTGLGLY
ISRELCESNQAHLDYRAREKGGSCMRITFAHPRKQG

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=1155293 ONG87_RS17680 WP_192054939.1 3885599..3887149(+) (pilS) [Pseudomonas sp. MM227]
ATGCTGCGCCTGTACCACCTCTACCGCTTGACCATCGGCCTGTCGCTGGTCCTGCTGATTTCCAGCAACATGGACAACCG
CCTGCTGGAAGTGGCCGATGGCGAACTGTTTCGCGCCGGCAGCTGGCTGTACCTGATCCTCAACATCCTGGTCGTGGTGC
TGATGGGCAACCCGCGTCGGGTCTTGCCGGTGTTCAGCCTGGCCACTGCCGACGTGATCATGCTCGCGGGCCTGTTCTAC
GCCGGCGGCGGTACACCCAGCGGTATCGGCAACCTGATGATCGCCTCGGTGGCCATGGGCAATCTGCTGCTGCGCAACCG
CCTGGGCCTGTTGATCGCCGCGCTGGCCACCATCGGCATCATCTACCTGACGTTCTACCTGAGCATCTCGCGCCCCACTG
CCGCCAACGACTACCTGCAGGCCAGCACTCTGGGTGTGCTCTGCTTCGCCGTGTGGTTCGTGGTTCAAGGCCTCAGTCGC
CTGCTGCGCACCAGTGAGAACCTGGCCGAGCAGCGCGCCAGCGACGTCACCAGTCTGGAAGCCCTGAACGCGCTGATTCT
GCAGCGCATGCGCACCGGCATCCTGGTGCTGGACACCGAACTGCGGGTGCAACTGGCCAACCAGGGCGCCTTGGGGCTTT
TTGGCCGCATGACACTCAATGGTGAGCTGATCGCCGTCCACTCACCCGACCTGATCGAACGGTTGCTGCAGTGGCAGACC
AACCCTGCCCTGCGCGTGAAAAGCCTCAAGTTCTCCCCTACCGGGCCGTCGATCCAGGCCAGCTTCATTGCCCTGCGTCG
CGGCGGTGAACAGCAGCAGACCCTGGTGTTTCTCGAAGACCTGTCGCAGATCGCGCAGCAGGCCCAGCAACTCAAGCTGG
CCGCGCTCGGCCGACTTACGGCCAGCATCGCCCACGAGATCCGCAACCCGCTGGGCGCCATCAGCCATGCCGGGCAATTG
CTGCAGGAATCCGAAGCCCTGCCGGTAGCCGACCGGCGTCTGACGCAGATCATTCAGGATCAATGCAAGCGCATGAACCT
GATCATCGAGAACGTGCTGCAGCTGTCGCGCCGGCGCCCCAGCGCACCGCATCCGCTGGACCTCAAGGCGTGGCTGGAAA
ACTTCGTCAGTGACTTTCGCACCACCGCGCGCCCGGGCCAGCAACTGCACATGTACGTCAGCGACGGCACCCTGGAAACC
CGCATGGATGCCAACCAGCTGACCCAGGTATTGAACAATCTGGTGGAAAACGGCCTGCGCTACAGCGCCCAGCAACAGGG
TCGCGCGCAGGTCTGGTTGAATCTTTTCGTGGAGCCGACCGACGGCCTGCCGATCCTCGAGGTGCTGGACGATGGTCCGG
GCTTTGCCGCCGATCAGTTGCAGCACATGTTCGAGCCTTTCTTCACCACCGAAAGCAACGGCACCGGGCTGGGCCTGTAT
ATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCACCTAGACTACAGAGCACGTGAAAAAGGGGGCAGCTGCATGCGCAT
CACCTTCGCCCACCCGCGCAAACAGGGATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(295-358)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(403-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.062

99.612

0.618

Multiple sequence alignment