Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | OOL12_RS14720 | Genome accession | NZ_OX344719 |
| Coordinates | 2911713..2912183 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain ST20190863 isolate ST20190863 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2886431..2917882 | 2911713..2912183 | within | 0 |
Gene organization within MGE regions
Location: 2886431..2917882
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OOL12_RS14550 | groES | 2886431..2886715 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| OOL12_RS14555 | groL | 2886791..2888407 (+) | 1617 | WP_264717402.1 | chaperonin GroEL | - |
| OOL12_RS14560 | - | 2888502..2889048 (-) | 547 | Protein_2825 | site-specific integrase | - |
| OOL12_RS14565 | - | 2889109..2889321 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| OOL12_RS14570 | - | 2889318..2889908 (+) | 591 | WP_001293058.1 | terminase small subunit | - |
| OOL12_RS14575 | - | 2890226..2890662 (+) | 437 | Protein_2828 | hypothetical protein | - |
| OOL12_RS14580 | - | 2890768..2891211 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| OOL12_RS14585 | - | 2892064..2893371 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| OOL12_RS14590 | - | 2893532..2894443 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| OOL12_RS14595 | - | 2894505..2895350 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| OOL12_RS14600 | - | 2895722..2896945 (-) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| OOL12_RS14605 | lukH | 2897380..2898435 (+) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| OOL12_RS14610 | lukG | 2898457..2899473 (+) | 1017 | WP_000595324.1 | bi-component leukocidin LukGH subunit G | - |
| OOL12_RS14615 | sph | 2899696..2900535 (-) | 840 | Protein_2836 | sphingomyelin phosphodiesterase | - |
| OOL12_RS14620 | - | 2900592..2901629 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| OOL12_RS14625 | - | 2901802..2902341 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| OOL12_RS14630 | - | 2902481..2902648 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| OOL12_RS14635 | - | 2902848..2903033 (-) | 186 | WP_001089804.1 | hypothetical protein | - |
| OOL12_RS14640 | - | 2903020..2903175 (-) | 156 | WP_001049399.1 | hypothetical protein | - |
| OOL12_RS14645 | - | 2903187..2903894 (-) | 708 | WP_000094093.1 | helix-turn-helix domain-containing protein | - |
| OOL12_RS14650 | - | 2904065..2904304 (+) | 240 | WP_000548578.1 | helix-turn-helix transcriptional regulator | - |
| OOL12_RS14655 | - | 2904317..2904577 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| OOL12_RS14660 | - | 2904601..2905140 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| OOL12_RS14665 | - | 2905197..2905949 (+) | 753 | WP_001148618.1 | phage antirepressor KilAC domain-containing protein | - |
| OOL12_RS14670 | - | 2905966..2906160 (+) | 195 | WP_000388066.1 | hypothetical protein | - |
| OOL12_RS14675 | - | 2906191..2906331 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| OOL12_RS14680 | - | 2906346..2906978 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| OOL12_RS14685 | - | 2907037..2907357 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| OOL12_RS14690 | - | 2907354..2907515 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| OOL12_RS14695 | - | 2907608..2907868 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| OOL12_RS14700 | - | 2907877..2908140 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| OOL12_RS14705 | - | 2908149..2910092 (+) | 1944 | WP_000700565.1 | AAA family ATPase | - |
| OOL12_RS14710 | - | 2910094..2911014 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| OOL12_RS14715 | - | 2911095..2911712 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| OOL12_RS14720 | ssbA | 2911713..2912183 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| OOL12_RS14725 | - | 2912213..2913097 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| OOL12_RS14730 | - | 2913104..2913322 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| OOL12_RS14735 | - | 2913331..2913735 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| OOL12_RS14740 | - | 2913748..2914116 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| OOL12_RS14745 | - | 2914120..2914362 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| OOL12_RS14750 | - | 2914427..2914876 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| OOL12_RS14755 | - | 2914873..2915382 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| OOL12_RS14760 | - | 2915379..2915789 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| OOL12_RS14765 | - | 2915782..2916318 (+) | 537 | WP_001066444.1 | dUTPase | - |
| OOL12_RS14770 | - | 2916355..2916561 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| OOL12_RS14775 | rinB | 2916558..2916707 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| OOL12_RS14780 | - | 2916707..2916907 (+) | 201 | WP_000265039.1 | DUF1514 family protein | - |
| OOL12_RS14785 | - | 2916935..2917351 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| OOL12_RS14790 | - | 2917583..2917882 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=1154857 OOL12_RS14720 WP_000934770.1 2911713..2912183(+) (ssbA) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1154857 OOL12_RS14720 WP_000934770.1 2911713..2912183(+) (ssbA) [Staphylococcus aureus strain ST20190863 isolate ST20190863]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |