Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIT1002_RS01165 Genome accession   NZ_OX335040
Coordinates   255635..256219 (+) Length   194 a.a.
NCBI ID   WP_014947881.1    Uniprot ID   A0AB32ZTF8
Organism   Alteromonas macleodii isolate Alteromonas macleodii 83-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 250635..261219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIT1002_RS01150 (ALT831_00234) - 251260..252315 (+) 1056 WP_014947878.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  MIT1002_RS01155 (ALT831_00235) galK 252308..253447 (+) 1140 WP_156077742.1 galactokinase -
  MIT1002_RS01160 (ALT831_00236) - 253805..255367 (+) 1563 WP_014975374.1 sodium/sugar symporter -
  MIT1002_RS01165 (ALT831_00237) ssb 255635..256219 (+) 585 WP_014947881.1 single-stranded DNA-binding protein Machinery gene
  MIT1002_RS01170 (ALT831_00238) - 256428..257381 (+) 954 WP_156077743.1 hypothetical protein -
  MIT1002_RS01175 (ALT831_00239) - 257560..258846 (+) 1287 WP_197040327.1 alpha/beta hydrolase family protein -
  MIT1002_RS01180 (ALT831_00240) - 258920..261049 (-) 2130 WP_156077745.1 alpha-galactosidase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21128.03 Da        Isoelectric Point: 4.9658

>NTDB_id=1154684 MIT1002_RS01165 WP_014947881.1 255635..256219(+) (ssb) [Alteromonas macleodii isolate Alteromonas macleodii 83-1]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1154684 MIT1002_RS01165 WP_014947881.1 255635..256219(+) (ssb) [Alteromonas macleodii isolate Alteromonas macleodii 83-1]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACACGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGTGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAAGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56

100

0.577
  ssb Vibrio cholerae strain A1552

54.5

100

0.562
  ssb Neisseria meningitidis MC58

46.354

98.969

0.459
  ssb Neisseria gonorrhoeae MS11

46.354

98.969

0.459

Multiple sequence alignment