Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VPUCM_RS14165 | Genome accession | NZ_CP007004 |
| Coordinates | 3044558..3045088 (-) | Length | 176 a.a. |
| NCBI ID | WP_005466625.1 | Uniprot ID | Q87LA3 |
| Organism | Vibrio parahaemolyticus UCM-V493 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3039558..3050088
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VPUCM_RS14145 (VPUCM_2808) | - | 3039876..3040205 (-) | 330 | WP_024703035.1 | MSHA biogenesis protein MshK | - |
| VPUCM_RS14150 (VPUCM_2809) | gspM | 3040198..3040848 (-) | 651 | WP_005497276.1 | type II secretion system protein GspM | - |
| VPUCM_RS14155 (VPUCM_2810) | - | 3040845..3042296 (-) | 1452 | WP_025442293.1 | hypothetical protein | - |
| VPUCM_RS14160 (VPUCM_2811) | csrD | 3042308..3044317 (-) | 2010 | WP_025442294.1 | RNase E specificity factor CsrD | - |
| VPUCM_RS14165 (VPUCM_2812) | ssb | 3044558..3045088 (-) | 531 | WP_005466625.1 | single-stranded DNA-binding protein | Machinery gene |
| VPUCM_RS14170 (VPUCM_2813) | qstR | 3045367..3046011 (+) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VPUCM_RS14175 (VPUCM_2814) | galU | 3046269..3047141 (+) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19563.62 Da Isoelectric Point: 4.9269
>NTDB_id=115468 VPUCM_RS14165 WP_005466625.1 3044558..3045088(-) (ssb) [Vibrio parahaemolyticus UCM-V493]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=115468 VPUCM_RS14165 WP_005466625.1 3044558..3045088(-) (ssb) [Vibrio parahaemolyticus UCM-V493]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTCGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAACAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTCGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAACAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.824 |
| ssb | Glaesserella parasuis strain SC1401 |
57.143 |
100 |
0.614 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.483 |