Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   VPUCM_RS09815 Genome accession   NZ_CP007004
Coordinates   2122645..2123232 (-) Length   195 a.a.
NCBI ID   WP_025442027.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus UCM-V493     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117645..2128232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPUCM_RS09795 (VPUCM_1972) - 2117842..2119107 (-) 1266 WP_025442023.1 DUF945 family protein -
  VPUCM_RS09800 (VPUCM_1973) - 2119294..2121234 (+) 1941 WP_025442024.1 ATP-binding protein -
  VPUCM_RS09805 (VPUCM_1974) - 2121231..2121728 (+) 498 WP_025442025.1 response regulator -
  VPUCM_RS09810 (VPUCM_1975) - 2121926..2122471 (+) 546 WP_025442026.1 hypothetical protein -
  VPUCM_RS09815 (VPUCM_1976) tfoX 2122645..2123232 (-) 588 WP_025442027.1 TfoX/Sxy family DNA transformation protein Regulator
  VPUCM_RS09825 (VPUCM_1978) - 2123603..2124523 (+) 921 WP_021449227.1 HDOD domain-containing protein -
  VPUCM_RS09830 (VPUCM_1979) - 2124631..2125536 (+) 906 WP_025442029.1 lysine exporter LysO family protein -
  VPUCM_RS09835 (VPUCM_1980) - 2125744..2126256 (+) 513 WP_005485575.1 hypothetical protein -
  VPUCM_RS09840 (VPUCM_1981) panP 2126417..2128063 (+) 1647 WP_005485571.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22432.78 Da        Isoelectric Point: 7.0628

>NTDB_id=115452 VPUCM_RS09815 WP_025442027.1 2122645..2123232(-) (tfoX) [Vibrio parahaemolyticus UCM-V493]
MDMTDQAFFKYVRNFNEYQKRSMFGGIGLFSDDAMFALVSSDCCYLRGGNGLDEEFTLLNCEKYKHVKKQTTATVNYYDV
TDLFESGFTGLDDLLRKSIDCSIKERKYQKSSASKRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVAYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=115452 VPUCM_RS09815 WP_025442027.1 2122645..2123232(-) (tfoX) [Vibrio parahaemolyticus UCM-V493]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAATTTTAATGAGTATCAGAAACGTTCTATGTTTGGTGGTAT
CGGCTTGTTTAGCGATGACGCCATGTTTGCGCTTGTCAGCAGTGATTGCTGTTATTTGCGCGGCGGTAATGGTTTAGACG
AAGAATTTACTCTGCTTAATTGTGAAAAATACAAGCACGTCAAAAAACAGACGACGGCTACTGTAAACTATTATGACGTA
ACCGATTTATTTGAGTCCGGATTTACTGGCCTTGACGATTTGTTACGCAAATCTATTGATTGCTCAATTAAGGAGCGAAA
ATACCAAAAGTCTTCTGCAAGTAAACGTTTGAGAGATCTACCGAACATGCAGCTTACATTAGAGCGCATGGTTAAAAAGG
CGGGTATTGATGATGTTGAAACCTTTTTGGAACTTGGTCCAGTTGAAGTATTCAACAAAGTAAGAGTTGCTTACGGCAAT
GATGTTGACGTTAAACTGCTGTGGAAGTTTGCTGGTGCCATTGATGGTGTGCACTGGAAACTAATCCAAGAGCCGCGCAA
AAAACAGTTACTGGCACTGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-101)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

99.487

100

0.995
  tfoX Vibrio campbellii strain DS40M4

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.394

98.974

0.677
  tfoX Vibrio cholerae strain A1552

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

57.068

97.949

0.559

Multiple sequence alignment