Detailed information
Bioinformatically predicted
Overview
| Name | ideA | Type | Regulator |
| Locus tag | VPUCM_RS03775 | Genome accession | NZ_CP007004 |
| Coordinates | 821562..822245 (-) | Length | 227 a.a. |
| NCBI ID | WP_025441436.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus UCM-V493 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 820106..868302 | 821562..822245 | within | 0 |
Gene organization within MGE regions
Location: 820106..868302
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VPUCM_RS03770 (VPUCM_0750) | - | 820106..821116 (+) | 1011 | WP_025441435.1 | GTP pyrophosphokinase family protein | - |
| VPUCM_RS03775 (VPUCM_0751) | ideA | 821562..822245 (-) | 684 | WP_025441436.1 | endonuclease | Regulator |
| VPUCM_RS03780 (VPUCM_0752) | - | 822354..822956 (-) | 603 | WP_001963923.1 | hypothetical protein | - |
| VPUCM_RS03785 (VPUCM_0753) | - | 823324..823650 (+) | 327 | WP_000455722.1 | hypothetical protein | - |
| VPUCM_RS03790 (VPUCM_0754) | - | 823666..824085 (+) | 420 | WP_025441437.1 | single-stranded DNA-binding protein | - |
| VPUCM_RS03795 (VPUCM_0755) | bet | 824165..824983 (+) | 819 | WP_025441438.1 | phage recombination protein Bet | - |
| VPUCM_RS27100 (VPUCM_0756) | - | 825066..825209 (+) | 144 | WP_015066581.1 | hypothetical protein | - |
| VPUCM_RS03800 (VPUCM_0757) | - | 825270..826286 (+) | 1017 | WP_001963283.1 | YqaJ viral recombinase family protein | - |
| VPUCM_RS03805 (VPUCM_0758) | - | 826496..827455 (+) | 960 | WP_025441439.1 | AAA family ATPase | - |
| VPUCM_RS03810 (VPUCM_0759) | - | 827455..828222 (+) | 768 | WP_025441440.1 | hypothetical protein | - |
| VPUCM_RS03815 (VPUCM_0760) | - | 828321..829274 (+) | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| VPUCM_RS03820 (VPUCM_0761) | - | 829336..829776 (+) | 441 | WP_025441441.1 | hypothetical protein | - |
| VPUCM_RS03825 (VPUCM_0762) | - | 829846..831501 (+) | 1656 | WP_025441442.1 | VWA domain-containing protein | - |
| VPUCM_RS03830 (VPUCM_0763) | radC | 831585..832082 (+) | 498 | WP_000797298.1 | DNA repair protein RadC | - |
| VPUCM_RS03835 (VPUCM_0764) | - | 832082..832423 (+) | 342 | WP_025441443.1 | hypothetical protein | - |
| VPUCM_RS03840 (VPUCM_0765) | - | 832513..833580 (+) | 1068 | WP_025441444.1 | primase-helicase zinc-binding domain-containing protein | - |
| VPUCM_RS03845 (VPUCM_0766) | - | 833670..833852 (+) | 183 | Protein_745 | hypothetical protein | - |
| VPUCM_RS03850 (VPUCM_0767) | - | 833923..834879 (-) | 957 | WP_235190484.1 | transposase | - |
| VPUCM_RS27285 (VPUCM_0768) | - | 834904..835059 (-) | 156 | WP_235190488.1 | hypothetical protein | - |
| VPUCM_RS27290 | - | 835056..835559 (-) | 504 | WP_235190491.1 | hypothetical protein | - |
| VPUCM_RS03855 | tnpB | 835633..835959 (-) | 327 | WP_025441446.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| VPUCM_RS03860 | - | 835956..836333 (-) | 378 | WP_025441447.1 | hypothetical protein | - |
| VPUCM_RS03865 (VPUCM_0769) | - | 836460..836840 (-) | 381 | WP_025441448.1 | hypothetical protein | - |
| VPUCM_RS03870 (VPUCM_0770) | - | 836971..838362 (+) | 1392 | WP_025441449.1 | sigma-54 dependent transcriptional regulator | - |
| VPUCM_RS27670 | - | 838680..838946 (+) | 267 | WP_025441450.1 | DUF6444 domain-containing protein | - |
| VPUCM_RS03880 (VPUCM_0771) | tnpC | 838964..840106 (+) | 1143 | WP_408063454.1 | IS66 family transposase | - |
| VPUCM_RS03885 (VPUCM_0772) | - | 840390..840833 (+) | 444 | WP_025441452.1 | Hsp20/alpha crystallin family protein | - |
| VPUCM_RS03890 (VPUCM_0773) | - | 840884..841270 (+) | 387 | WP_025441453.1 | Hsp20/alpha crystallin family protein | - |
| VPUCM_RS03895 (VPUCM_0774) | - | 841343..843322 (+) | 1980 | WP_038398311.1 | cation:proton antiporter | - |
| VPUCM_RS03900 (VPUCM_0775) | - | 843394..843822 (+) | 429 | WP_200867534.1 | phosphate-starvation-inducible PsiE family protein | - |
| VPUCM_RS03905 (VPUCM_0776) | grpE | 843845..844405 (+) | 561 | WP_025441456.1 | nucleotide exchange factor GrpE | - |
| VPUCM_RS03910 (VPUCM_0777) | dnaK | 844423..846315 (+) | 1893 | WP_025441457.1 | molecular chaperone DnaK | - |
| VPUCM_RS03915 (VPUCM_0778) | - | 846361..847257 (+) | 897 | WP_025441458.1 | YfdX family protein | - |
| VPUCM_RS03920 (VPUCM_0779) | - | 847510..848007 (+) | 498 | WP_025441459.1 | Hsp20/alpha crystallin family protein | - |
| VPUCM_RS03925 (VPUCM_0781) | clpB | 848251..850848 (+) | 2598 | WP_025441460.1 | ATP-dependent chaperone ClpB | - |
| VPUCM_RS03930 (VPUCM_0782) | - | 850908..851858 (+) | 951 | WP_025441461.1 | DnaJ C-terminal domain-containing protein | - |
| VPUCM_RS03935 (VPUCM_0783) | - | 851861..852184 (+) | 324 | WP_025441462.1 | chaperone modulator CbpM | - |
| VPUCM_RS03940 (VPUCM_0784) | - | 852193..853164 (+) | 972 | WP_025441463.1 | zinc metalloprotease HtpX | - |
| VPUCM_RS03945 (VPUCM_0785) | - | 853351..854111 (+) | 761 | WP_172567254.1 | IS5 family transposase | - |
| VPUCM_RS27675 | - | 854360..854500 (+) | 141 | Protein_768 | PAS domain-containing protein | - |
| VPUCM_RS03955 | - | 854556..854944 (-) | 389 | Protein_769 | transposase | - |
| VPUCM_RS03960 (VPUCM_0787) | fbaA | 855158..856234 (+) | 1077 | WP_025441465.1 | class II fructose-bisphosphate aldolase | - |
| VPUCM_RS03965 (VPUCM_0789) | - | 856588..857097 (-) | 510 | WP_025441466.1 | GGDEF domain-containing protein | - |
| VPUCM_RS03970 (VPUCM_0790) | - | 857109..857612 (-) | 504 | Protein_772 | IS1595 family transposase | - |
| VPUCM_RS03975 (VPUCM_0791) | - | 857677..858549 (+) | 873 | Protein_773 | IS30 family transposase | - |
| VPUCM_RS03980 (VPUCM_0792) | - | 858689..859633 (+) | 945 | WP_025441469.1 | thioredoxin family protein | - |
| VPUCM_RS03985 (VPUCM_0793) | - | 859636..861024 (+) | 1389 | WP_025441470.1 | conjugal transfer protein TraH | - |
| VPUCM_RS03990 (VPUCM_0794) | - | 861028..864597 (+) | 3570 | WP_025441471.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| VPUCM_RS03995 | eexS | 864630..865061 (-) | 432 | WP_025441472.1 | entry exclusion protein EexS | - |
| VPUCM_RS04000 (VPUCM_0796) | - | 865116..865649 (-) | 534 | WP_025441473.1 | FlhC family transcriptional regulator | - |
| VPUCM_RS04005 (VPUCM_0797) | - | 865646..865945 (-) | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| VPUCM_RS04010 (VPUCM_0798) | - | 865942..866490 (-) | 549 | WP_001963950.1 | lytic transglycosylase domain-containing protein | - |
| VPUCM_RS04015 (VPUCM_0799) | - | 866477..867139 (-) | 663 | WP_038398316.1 | DUF6475 domain-containing protein | - |
| VPUCM_RS04020 (VPUCM_0800) | - | 867126..867995 (-) | 870 | WP_025441475.1 | hypothetical protein | - |
| VPUCM_RS04025 (VPUCM_0801) | - | 868051..868302 (-) | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 227 a.a. Molecular weight: 26453.50 Da Isoelectric Point: 7.1836
>NTDB_id=115443 VPUCM_RS03775 WP_025441436.1 821562..822245(-) (ideA) [Vibrio parahaemolyticus UCM-V493]
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVNFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDLKIKSIQGNSNCYVSDSC
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVNFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDLKIKSIQGNSNCYVSDSC
Nucleotide
Download Length: 684 bp
>NTDB_id=115443 VPUCM_RS03775 WP_025441436.1 821562..822245(-) (ideA) [Vibrio parahaemolyticus UCM-V493]
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCAATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCACGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTAATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATCTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTACGTGATTTGAAGATTAAAA
GTATTCAAGGTAACTCGAATTGCTATGTATCAGATAGCTGTTAA
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCAATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCACGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTAATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATCTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTACGTGATTTGAAGATTAAAA
GTATTCAAGGTAACTCGAATTGCTATGTATCAGATAGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ideA | Vibrio cholerae O1 str. 2010EL-1786 |
96.035 |
100 |
0.96 |
| dns | Vibrio parahaemolyticus RIMD 2210633 |
53.275 |
100 |
0.537 |
| dns | Aliivibrio fischeri ES114 |
52.174 |
100 |
0.529 |
| dns | Vibrio cholerae strain A1552 |
52.444 |
99.119 |
0.52 |
| dns | Campylobacter jejuni RM1221 |
38.182 |
96.916 |
0.37 |