Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Y590_RS10360 Genome accession   NZ_CP006992
Coordinates   2295002..2295565 (-) Length   187 a.a.
NCBI ID   WP_060769761.1    Uniprot ID   -
Organism   Methylobacterium sp. AMS5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2290002..2300565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y590_RS10340 (Y590_10755) - 2290749..2292587 (+) 1839 WP_060772243.1 NADPH-dependent assimilatory sulfite reductase hemoprotein subunit -
  Y590_RS10345 (Y590_10760) panC 2292659..2293516 (-) 858 WP_060769758.1 pantoate--beta-alanine ligase -
  Y590_RS10350 (Y590_10765) - 2293593..2293949 (-) 357 WP_060769759.1 hypothetical protein -
  Y590_RS10355 (Y590_10770) - 2294022..2294627 (-) 606 WP_060769760.1 XRE family transcriptional regulator -
  Y590_RS10360 (Y590_10775) ssb 2295002..2295565 (-) 564 WP_060769761.1 single-stranded DNA-binding protein Machinery gene
  Y590_RS10365 (Y590_10780) - 2295772..2296788 (-) 1017 WP_060769762.1 NADP-dependent oxidoreductase -
  Y590_RS10370 (Y590_10785) - 2296882..2297289 (+) 408 WP_060769763.1 DUF4174 domain-containing protein -
  Y590_RS10375 (Y590_10790) - 2297342..2297917 (-) 576 WP_060769764.1 hypothetical protein -
  Y590_RS10380 (Y590_10795) - 2298145..2298918 (+) 774 WP_060769765.1 phosphodiester glycosidase family protein -
  Y590_RS10385 (Y590_10800) - 2298947..2300065 (-) 1119 WP_060769766.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20028.80 Da        Isoelectric Point: 6.0203

>NTDB_id=115413 Y590_RS10360 WP_060769761.1 2295002..2295565(-) (ssb) [Methylobacterium sp. AMS5]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLARVAEQYLRKGSKVYI
EGQLQTRKWTDQSGAEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDEGGGQISRGGDRGGDRGGDRGGRDDYGSSRS
GGGGDRRPASGSGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=115413 Y590_RS10360 WP_060769761.1 2295002..2295565(-) (ssb) [Methylobacterium sp. AMS5]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
TCCCGTGGTGAACCTGCGCATCGCGACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGTAAGGAGAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCCGCGTTGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTCCAGACCCGCAAGTGGACCGACCAGTCGGGCGCGGAGAAGTACACCACCGAGGTGGTGCTTCAGCGCTT
CCGTGGCGAGATGACGATTCTCGACGGCCGGGGCGGCGGCGGCGGTGGCGACTTCGCCGGCGAGGACGAGGGCGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGGGGTGATCGCGGCGGCGACCGCGGCGGGCGCGACGATTACGGCTCGAGCCGCTCC
GGCGGCGGCGGCGATCGCCGGCCGGCCTCGGGCAGCGGCGGCGCCAAGCCGAACTACGATCTCGACGACGACATCCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.205

100

0.503
  ssb Vibrio cholerae strain A1552

49.727

97.861

0.487
  ssb Neisseria gonorrhoeae MS11

40.217

98.396

0.396
  ssb Neisseria meningitidis MC58

39.674

98.396

0.39

Multiple sequence alignment