Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PMCN01_RS00250 Genome accession   NZ_CP006976
Coordinates   40242..40706 (-) Length   154 a.a.
NCBI ID   WP_016570065.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. multocida HB01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 35242..45706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMCN01_RS11775 - 36083..36454 (-) 372 WP_223251315.1 hypothetical protein -
  PMCN01_RS11780 (PMCN01_0038) - 36585..37070 (-) 486 WP_016533426.1 hypothetical protein -
  PMCN01_RS00220 (PMCN01_0039) - 37156..37455 (-) 300 WP_016533427.1 hypothetical protein -
  PMCN01_RS00225 (PMCN01_0040) - 37465..37998 (-) 534 WP_016570062.1 DUF551 domain-containing protein -
  PMCN01_RS00230 (PMCN01_0041) - 38133..38732 (-) 600 WP_014391447.1 hypothetical protein -
  PMCN01_RS00235 (PMCN01_0042) - 38783..39571 (-) 789 WP_014391448.1 DUF2303 family protein -
  PMCN01_RS00240 (PMCN01_0043) - 39643..39996 (-) 354 WP_016570064.1 hypothetical protein -
  PMCN01_RS00245 (PMCN01_0044) - 40039..40230 (-) 192 WP_016533530.1 hypothetical protein -
  PMCN01_RS00250 (PMCN01_0045) ssb 40242..40706 (-) 465 WP_016570065.1 single-stranded DNA-binding protein Machinery gene
  PMCN01_RS00255 (PMCN01_0046) - 40710..41321 (-) 612 WP_064775601.1 YqaJ viral recombinase family protein -
  PMCN01_RS00260 (PMCN01_0047) bet 41314..42165 (-) 852 WP_016533454.1 phage recombination protein Bet -
  PMCN01_RS00265 (PMCN01_0048) - 42169..43155 (-) 987 WP_016570067.1 hypothetical protein -
  PMCN01_RS11710 - 43158..43319 (-) 162 WP_014390707.1 hypothetical protein -
  PMCN01_RS00270 (PMCN01_0049) - 43333..43569 (-) 237 WP_016570068.1 hypothetical protein -
  PMCN01_RS00275 (PMCN01_0050) - 43556..43840 (-) 285 WP_064775602.1 hypothetical protein -
  PMCN01_RS00280 (PMCN01_0051) - 43907..44218 (+) 312 WP_014390710.1 hypothetical protein -
  PMCN01_RS00285 (PMCN01_0052) - 44280..44915 (-) 636 WP_016569990.1 Bro-N domain-containing protein -
  PMCN01_RS11870 (PMCN01_0053) - 45251..45376 (+) 126 WP_014391103.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17207.00 Da        Isoelectric Point: 6.9818

>NTDB_id=115382 PMCN01_RS00250 WP_016570065.1 40242..40706(-) (ssb) [Pasteurella multocida subsp. multocida HB01]
MAGVNKVIIVGNLGNDPDVRTMPNGDAVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQAPQNNAYANAKAGKPVQQADSFEDDSIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=115382 PMCN01_RS00250 WP_016570065.1 40242..40706(-) (ssb) [Pasteurella multocida subsp. multocida HB01]
ATGGCTGGGGTAAATAAAGTAATTATCGTCGGGAATTTGGGAAACGATCCTGATGTCCGCACAATGCCAAATGGCGACGC
AGTGGCAAAAATTAGTGTGGCCACGAGCGAAAGTTGGATCGACAAAAACACGAACGAGCGAAAAACGCAGACAGAATGGC
ACTCTATCGTGTTTTATCGCCGCCAAGCAGAAATTTGCGGGCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACTGAAATCCAAGGCGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACCGCAAAACAATGCTTATGCCA
ATGCGAAAGCTGGAAAGCCAGTGCAACAGGCTGATAGTTTTGAAGATGATAGCATACCTTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

62.983

100

0.74
  ssb Vibrio cholerae strain A1552

48.276

100

0.545
  ssb Neisseria meningitidis MC58

42.775

100

0.481
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.481

Multiple sequence alignment