Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OOS96_RS18955 Genome accession   NZ_OW970315
Coordinates   4036644..4037180 (-) Length   178 a.a.
NCBI ID   WP_031594539.1    Uniprot ID   A0AAN2K7B0
Organism   Pantoea agglomerans strain DAPP-PG734     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4031644..4042180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOS96_RS18920 (DAPPPG734_19200) - 4032067..4032639 (-) 573 WP_264704752.1 restriction endonuclease -
  OOS96_RS18925 (DAPPPG734_19205) - 4032639..4033160 (-) 522 WP_031594533.1 integrating conjugative element protein -
  OOS96_RS18930 (DAPPPG734_19210) - 4033166..4033801 (-) 636 WP_031594534.1 lytic transglycosylase domain-containing protein -
  OOS96_RS18935 (DAPPPG734_19215) - 4033780..4034502 (-) 723 WP_031594535.1 TIGR03759 family integrating conjugative element protein -
  OOS96_RS18940 (DAPPPG734_19220) - 4034514..4035272 (-) 759 WP_031594536.1 hypothetical protein -
  OOS96_RS18945 (DAPPPG734_19225) - 4035269..4035934 (-) 666 WP_031594537.1 PilL N-terminal domain-containing protein -
  OOS96_RS18950 (DAPPPG734_19230) - 4036073..4036510 (-) 438 WP_031594538.1 DUF29 domain-containing protein -
  OOS96_RS18955 (DAPPPG734_19235) ssb 4036644..4037180 (-) 537 WP_031594539.1 single-stranded DNA-binding protein Machinery gene
  OOS96_RS18960 (DAPPPG734_19240) - 4037241..4037711 (-) 471 WP_016151303.1 STY4534 family ICE replication protein -
  OOS96_RS18965 (DAPPPG734_19250) - 4038349..4040370 (-) 2022 WP_031594540.1 DNA topoisomerase III -
  OOS96_RS18970 (DAPPPG734_19255) - 4040386..4040940 (-) 555 WP_031594541.1 hypothetical protein -
  OOS96_RS18975 (DAPPPG734_19260) - 4040942..4041655 (-) 714 WP_031594542.1 PFL_4669 family integrating conjugative element protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19268.38 Da        Isoelectric Point: 5.7710

>NTDB_id=1153767 OOS96_RS18955 WP_031594539.1 4036644..4037180(-) (ssb) [Pantoea agglomerans strain DAPP-PG734]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQEKYTTEVVVNISGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGLGYDCSRVAIYAL

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1153767 OOS96_RS18955 WP_031594539.1 4036644..4037180(-) (ssb) [Pantoea agglomerans strain DAPP-PG734]
ATGTCCTCACGCGGCGTTAACAAGGTTATCCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTTCGTTATATTCCCAACGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCCGGCGAACAGAAAGAAGTGACCG
AATGGCACAGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGTCAGCTGCGCACACGCAAATGGACCGATCAGGCCGGCCAGGAGAAATACACCACAGAGGTGGTGGTTAACATTAG
TGGCACCATGCAGATGCTTGGCGGCCGCCAGTCCGGCAGCGGACAGAATACGTCTTCCCGGAATGACTGGGGGCAGCCTC
AGCAACCTTCAGGACCGACTCACAGTGGCCAGGCCTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTTGACGATGAT
ATACCGTTCATTGGCCTCGGGTATGACTGTTCCAGAGTGGCAATTTACGCCCTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.842

99.438

0.635
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.5
  ssb Neisseria meningitidis MC58

44.633

99.438

0.444
  ssb Neisseria gonorrhoeae MS11

44.318

98.876

0.438

Multiple sequence alignment