Detailed information NTG0115340

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: BAMY6614_RS14980
• Genome accession: NZ_CP006960
• Coordinates: 3168350..3168787 (-)
• Length: 145 a.a.
• NCBI ID: WP_007612572.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6614
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3163350..3173787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6614_RS14930 (BAMY6614_15775)	sinI	3163733..3163906 (+)	174	WP_014418369.1	anti-repressor SinI	Regulator
BAMY6614_RS14935 (BAMY6614_15780)	sinR	3163940..3164275 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
BAMY6614_RS14940 (BAMY6614_15785)	tasA	3164323..3165108 (-)	786	WP_007408329.1	biofilm matrix protein TasA	-
BAMY6614_RS14945 (BAMY6614_15790)	sipW	3165173..3165757 (-)	585	WP_014418370.1	signal peptidase I SipW	-
BAMY6614_RS14950 (BAMY6614_15795)	tapA	3165729..3166400 (-)	672	WP_014418371.1	amyloid fiber anchoring/assembly protein TapA	-
BAMY6614_RS14955 (BAMY6614_15800)	-	3166659..3166988 (+)	330	WP_012117979.1	DUF3889 domain-containing protein	-
BAMY6614_RS14960 (BAMY6614_15805)	-	3167029..3167208 (-)	180	WP_003153093.1	YqzE family protein	-
BAMY6614_RS14965 (BAMY6614_15810)	comGG	3167265..3167642 (-)	378	WP_061862389.1	competence type IV pilus minor pilin ComGG	Machinery gene
BAMY6614_RS14970 (BAMY6614_15815)	comGF	3167643..3168038 (-)	396	WP_061862390.1	competence type IV pilus minor pilin ComGF	-
BAMY6614_RS14975 (BAMY6614_15820)	comGE	3168052..3168366 (-)	315	WP_061862391.1	competence type IV pilus minor pilin ComGE	Machinery gene
BAMY6614_RS14980 (BAMY6614_15825)	comGD	3168350..3168787 (-)	438	WP_007612572.1	competence type IV pilus minor pilin ComGD	Machinery gene
BAMY6614_RS14985 (BAMY6614_15830)	comGC	3168777..3169043 (-)	267	WP_050496152.1	competence type IV pilus major pilin ComGC	Machinery gene
BAMY6614_RS14990 (BAMY6614_15835)	comGB	3169090..3170127 (-)	1038	WP_061862392.1	competence type IV pilus assembly protein ComGB	Machinery gene
BAMY6614_RS14995 (BAMY6614_15840)	comGA	3170114..3171184 (-)	1071	WP_061862635.1	competence type IV pilus ATPase ComGA	Machinery gene
BAMY6614_RS15000 (BAMY6614_15845)	-	3171377..3172327 (-)	951	WP_014418379.1	magnesium transporter CorA family protein	-
BAMY6614_RS15005 (BAMY6614_15850)	-	3172473..3173774 (+)	1302	WP_061862393.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16254.76 Da
• Isoelectric Point: 10.1850

>NTDB_id=115340 BAMY6614_RS14980 WP_007612572.1 3168350..3168787(-) (comGD) [Bacillus amyloliquefaciens UMAF6614]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=115340 BAMY6614_RS14980 WP_007612572.1 3168350..3168787(-) (comGD) [Bacillus amyloliquefaciens UMAF6614]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTACTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACGCTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATACAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	55.479	100	0.559