Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQ154_RS23515 Genome accession   NZ_OW849082
Coordinates   4743521..4744045 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii isolate 8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4738521..4749045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ154_RS23505 (AI2642V1_4607) - 4740365..4740646 (+) 282 WP_003031727.1 YjcB family protein -
  LQ154_RS23510 (AI2642V1_4608) - 4740730..4743039 (-) 2310 WP_128295865.1 autotransporter outer membrane beta-barrel domain-containing protein -
  LQ154_RS23515 (AI2642V1_4609) ssb 4743521..4744045 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LQ154_RS23520 (AI2642V1_4610) uvrA 4744297..4747119 (+) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  LQ154_RS23525 (AI2642V1_4611) - 4747235..4747591 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  LQ154_RS23530 (AI2642V1_4612) aphA 4747719..4748432 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=1152763 LQ154_RS23515 WP_003826621.1 4743521..4744045(-) (ssb) [Citrobacter freundii isolate 8]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1152763 LQ154_RS23515 WP_003826621.1 4743521..4744045(-) (ssb) [Citrobacter freundii isolate 8]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5

Multiple sequence alignment