Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NBW44_RS05935 Genome accession   NZ_OW724079
Coordinates   1161511..1163478 (-) Length   655 a.a.
NCBI ID   WP_250307591.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156511..1168478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS05920 cps4B 1157049..1157780 (-) 732 WP_250307588.1 capsular polysaccharide biosynthesis protein Cps4B -
  NBW44_RS05925 - 1157782..1159227 (-) 1446 WP_250307589.1 LCP family protein -
  NBW44_RS05930 amiA3 1159380..1161338 (-) 1959 WP_250307590.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS05935 amiA 1161511..1163478 (-) 1968 WP_250307591.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS05940 - 1163643..1165253 (-) 1611 WP_250307592.1 alpha-glucosidase -
  NBW44_RS05945 - 1165402..1166886 (+) 1485 WP_250307593.1 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72670.20 Da        Isoelectric Point: 4.9046

>NTDB_id=1152608 NBW44_RS05935 WP_250307591.1 1161511..1163478(-) (amiA) [Streptococcus sp. Marseille-Q3533]
MKSKKLLAVAGITMSAALLLAACGKTEKKADAPTTFSYVYAIDPSTLDYSVTSKSSTSDVIANLVDGLLENDKYGNLIPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLTLIQDSIKGLAEYVSGESNDFSTVG
IKAVDDYTVQYTLNQPESFWNSKVTTATMLPVNEEFLNSQGKDYGAATPSGILYNGPYILKNFTSKSVIEYEKNPNYWDK
DNVKIDHIKLTFYDGSDQESLIRSFSSGAYTTARLFPTSSNFDSTKQEYGDKIVYSPQEATSYYFTFNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQAINFALDRHSYAAQLNGEEGADKIIRNSLVPFDYVQVGEKTFGELAREQLVTYGDQWKDVA
LVDGKDTLYNPEKAKAAFEKAKSELQDKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESALGTENVVIDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVMAQVGLDEYKKLLDDAASETTDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDIVTTKEYEEAFKKWQKEKI
ETNAKYQKELANHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1152608 NBW44_RS05935 WP_250307591.1 1161511..1163478(-) (amiA) [Streptococcus sp. Marseille-Q3533]
ATGAAATCGAAAAAGTTGCTCGCAGTAGCAGGGATAACGATGAGTGCAGCTCTTCTTTTAGCGGCTTGTGGAAAGACAGA
GAAAAAAGCAGATGCTCCTACAACATTTTCATACGTATATGCCATCGATCCATCAACATTGGACTATAGCGTTACTAGTA
AAAGTTCAACATCAGACGTTATCGCTAACTTGGTCGACGGACTCTTGGAAAATGACAAATACGGAAACTTGATTCCATCT
CTTGCCGAAGACTGGTCGGTTTCACAAGACGGTTTGACCTATACTTACAAACTACGTAAAGGTGTCAAATGGTATACTTC
TGAAGGTGAGGAGTACGCCGAGGTCAAGGCTCAAGACTTTGTGACTGGTTTGAAACATGCTGCTGATGGCAAATCGGATG
GTTTAACTCTTATCCAAGATTCTATTAAAGGATTGGCAGAATATGTCAGTGGTGAGAGCAACGACTTCTCAACAGTAGGA
ATCAAGGCGGTTGATGATTATACTGTTCAATATACCTTGAATCAACCTGAAAGCTTCTGGAATTCCAAGGTGACAACGGC
GACTATGCTTCCAGTTAATGAGGAATTCTTAAACTCTCAAGGTAAAGATTATGGTGCAGCAACACCTTCAGGGATTCTCT
ATAATGGACCATATATTTTGAAGAACTTCACTTCAAAATCAGTGATCGAGTACGAAAAAAATCCAAATTATTGGGATAAA
GACAATGTTAAGATTGACCACATCAAACTTACTTTCTACGATGGATCTGACCAAGAATCATTGATTCGTAGTTTCTCATC
AGGAGCCTATACAACAGCTCGTCTCTTCCCAACAAGTTCAAACTTTGATTCAACTAAGCAAGAATACGGGGATAAGATTG
TCTATAGTCCGCAAGAAGCGACCAGCTATTACTTTACTTTCAACGTGAATCGTCAGTCTTACAATAAAACAGCAAAGACA
GATGAAGCACAAAAGACTTCTACAAAAGAAGCGCTTCTCAACAAAAACTTCCGCCAGGCAATCAACTTTGCTCTTGACCG
TCATTCTTATGCGGCTCAGTTGAATGGTGAAGAAGGGGCAGACAAGATTATCCGTAATAGCCTTGTGCCTTTTGATTATG
TTCAGGTAGGGGAAAAAACCTTTGGAGAACTAGCTCGGGAACAATTGGTTACATATGGAGATCAATGGAAGGATGTAGCT
TTGGTAGATGGTAAAGATACTCTTTACAATCCTGAAAAAGCAAAAGCTGCCTTTGAAAAAGCCAAGTCAGAATTACAAGA
CAAGGGTGTTACTTTCCCGATTCATTTAGATATTCCAGTTGAACAGACAGATGTGATTGCTGTGCAACAGACAAACTCAC
TCAAACAATCTATCGAATCAGCGCTTGGTACTGAAAATGTCGTTATCGATGTGCTTCAAATGACAGATAATGAGAAAATG
AGTATTACATCTCAAGCCAAGGTTCCTTCTCAAAAAGACTATGACTTGAATGGAACTGGTTGGGGACCAGACTATCAAGA
TCCAGCTACTTATCTAAATATCCTGGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGTATCACAAAAGGAAAAGATC
CAGAAGTCATGGCTCAAGTTGGACTTGATGAATACAAGAAACTCTTGGATGATGCAGCATCTGAAACAACAGACCTTAAC
AAACGCTATGAAAAATATGCTAAAGCACAAGCTTGGGTATCTGATAGCTCGCTCCTCATTCCTGTTGCTTCTTCAGGTGG
TTCTCCGACTGTGAGTCGTACAGTTCCATTTACCAAGGCCTACTCTCAAGTTGGAATTAAGGGTGATCCATTTGTATTCA
AAGGTTTGGAATTGCAAAATGATATTGTAACCACTAAAGAATACGAAGAAGCCTTCAAGAAATGGCAAAAAGAGAAAATT
GAAACAAATGCTAAATACCAAAAAGAGTTAGCTAACCACATTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.559

100

0.548
  amiA3 Streptococcus thermophilus LMD-9

53.718

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.263

100

0.536

Multiple sequence alignment