Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   NBW44_RS05930 Genome accession   NZ_OW724079
Coordinates   1159380..1161338 (-) Length   652 a.a.
NCBI ID   WP_250307590.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1154380..1166338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS05910 - 1155636..1156337 (-) 702 WP_250307586.1 tyrosine-protein kinase -
  NBW44_RS05915 - 1156348..1157040 (-) 693 WP_250307587.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  NBW44_RS05920 cps4B 1157049..1157780 (-) 732 WP_250307588.1 capsular polysaccharide biosynthesis protein Cps4B -
  NBW44_RS05925 - 1157782..1159227 (-) 1446 WP_250307589.1 LCP family protein -
  NBW44_RS05930 amiA3 1159380..1161338 (-) 1959 WP_250307590.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS05935 amiA 1161511..1163478 (-) 1968 WP_250307591.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS05940 - 1163643..1165253 (-) 1611 WP_250307592.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72792.73 Da        Isoelectric Point: 4.5991

>NTDB_id=1152607 NBW44_RS05930 WP_250307590.1 1159380..1161338(-) (amiA3) [Streptococcus sp. Marseille-Q3533]
MRLKKRLLGAGLTLATTVLLAACGQSASDDKTYSSTFGADPTTFNYLLDYSGDNTNVITNLVDGLLENDSYGNLVPALAE
DWSVSKDGLTYTYKLRQDAKWFTADGEEYALIKAQDFVTGIKYAADNKSQALDLIQNSIKGLDDYVTGANSDFSNVGVKA
LDDYTVQYTLTRPESFWNSKTTNSILFPVNEEFLSSKDKEFGELKPDSILYSGPYLLKEFTSKSSLEYMKNPHYYDQEKV
TIERVKLAYVDGSDQDMTIRNFESGAYSSAGVYPNSSNFAKTKEKYRDNIVYSLQGATSWYYNFNVNRQAYNHTAKTSDE
QKQATKTAILNKNFRQAINFALDRTAYSAQSNGEEAAKNTLRNTLVPPTFVQVGDKTFGETVASKLVNYGTEWANMNLED
AQDGYFNKEKAQAQFAEAKKELEAQGVTFPIHLDLPVDQVNKTLLPKLYSLKQSVESTLGEENVVIDVVLVSTEDYANAT
FQAPTPADHDYDLNLDGWSADYQDPSTYLNPFNAEDGFYLKILGLDPSKDADKITSLGMDQYTQKLKVADAESSDVAKRY
ENYADAQAWLIDSSLLIPVNSDGGGASVTRVTPFTRAYSLVGIKGTGSNYKYMRLQKDVVTIAQFDEAKAKWEQERKNSV
EKNQKELENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1152607 NBW44_RS05930 WP_250307590.1 1159380..1161338(-) (amiA3) [Streptococcus sp. Marseille-Q3533]
ATGAGACTTAAAAAACGCTTGTTGGGAGCGGGTTTGACTCTTGCTACTACTGTATTGCTGGCAGCTTGTGGTCAGTCTGC
ATCGGACGATAAGACCTACTCATCGACATTTGGTGCTGATCCAACTACTTTTAACTATCTTTTGGATTATTCTGGTGACA
ATACCAATGTCATCACCAACTTGGTAGATGGTCTTTTGGAAAATGACAGCTATGGGAATCTGGTTCCTGCTCTTGCAGAG
GATTGGAGTGTCTCAAAGGATGGTCTGACCTATACTTATAAACTTCGCCAAGATGCTAAGTGGTTCACTGCTGATGGGGA
GGAATATGCGCTTATCAAAGCTCAGGATTTTGTGACTGGTATCAAATACGCTGCTGATAATAAGAGTCAAGCGCTAGATT
TGATTCAAAACTCAATCAAAGGTTTGGATGATTATGTGACAGGAGCAAACTCAGACTTTTCAAATGTTGGTGTCAAAGCC
TTAGACGACTATACAGTCCAATACACCTTGACACGTCCAGAGAGTTTCTGGAATTCTAAGACAACTAATAGTATCTTGTT
CCCAGTTAATGAAGAATTCTTGTCTTCTAAAGACAAAGAATTTGGAGAATTAAAACCAGACAGTATCCTCTATAGTGGTC
CTTATTTGTTAAAAGAATTTACATCTAAATCATCACTTGAGTATATGAAAAACCCTCATTACTATGATCAAGAAAAAGTG
ACGATTGAAAGAGTTAAGCTGGCTTATGTTGATGGTTCTGACCAAGATATGACGATTCGTAACTTTGAGAGTGGAGCCTA
CTCGTCTGCAGGTGTCTACCCAAATAGTTCAAATTTCGCCAAGACCAAAGAAAAATACAGGGACAATATCGTCTATAGCT
TACAAGGTGCGACTTCTTGGTACTATAACTTCAACGTTAACCGTCAAGCCTATAACCATACAGCTAAGACAAGCGATGAG
CAGAAACAAGCTACAAAAACTGCGATTTTAAATAAAAATTTCCGTCAAGCTATTAACTTCGCCCTTGATCGTACAGCCTA
CTCAGCTCAGTCTAATGGGGAAGAAGCTGCTAAAAATACTCTTCGTAACACACTTGTGCCACCTACTTTTGTACAAGTAG
GAGATAAAACTTTTGGTGAGACAGTTGCCTCTAAGTTGGTGAATTACGGCACAGAATGGGCTAATATGAATCTTGAAGAC
GCTCAAGATGGTTACTTCAACAAAGAAAAAGCGCAAGCTCAATTTGCAGAAGCTAAAAAAGAACTAGAGGCTCAAGGTGT
GACCTTCCCGATTCATTTGGATTTGCCAGTGGATCAGGTCAACAAAACCTTGCTTCCTAAGCTTTACTCACTCAAGCAAT
CTGTGGAATCCACTCTTGGAGAGGAAAATGTAGTCATTGATGTAGTTTTAGTTTCAACTGAAGACTATGCCAATGCGACT
TTCCAAGCACCAACGCCAGCTGATCATGACTATGATTTGAACTTGGATGGATGGTCAGCAGACTACCAAGATCCATCAAC
TTACCTCAATCCTTTTAACGCAGAAGATGGTTTCTATCTTAAGATTTTGGGACTTGATCCAAGTAAGGATGCTGACAAGA
TTACAAGTCTAGGAATGGATCAATATACTCAGAAATTGAAAGTGGCGGATGCAGAAAGTTCAGATGTTGCAAAACGTTAT
GAAAATTATGCAGATGCACAAGCTTGGTTAATTGACAGTTCGCTTCTTATCCCTGTGAATTCAGATGGTGGTGGAGCTTC
AGTGACCCGTGTGACGCCATTTACACGAGCATACTCACTTGTTGGAATCAAAGGAACTGGAAGTAACTACAAATACATGA
GACTGCAGAAAGATGTGGTTACCATTGCCCAATTTGACGAAGCTAAAGCCAAATGGGAACAAGAACGCAAAAATTCAGTC
GAAAAGAATCAAAAAGAGCTTGAAAATCACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.368

100

0.518
  amiA3 Streptococcus thermophilus LMG 18311

50.76

100

0.512
  amiA Streptococcus salivarius strain HSISS4

50.837

100

0.512

Multiple sequence alignment