Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMG62_RS00870 Genome accession   NZ_OW659477
Coordinates   183081..183554 (-) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix amsterdamensis strain A18Y016a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 178081..188554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG62_RS00845 (ERYAMS2_00168) dnaB 178405..179775 (-) 1371 WP_254006971.1 replicative DNA helicase -
  NMG62_RS00850 (ERYAMS2_00169) rplI 179787..180233 (-) 447 WP_013853429.1 50S ribosomal protein L9 -
  NMG62_RS00855 (ERYAMS2_00170) - 180235..182190 (-) 1956 WP_254006972.1 DHH family phosphoesterase -
  NMG62_RS00860 (ERYAMS2_00171) - 182237..182776 (-) 540 WP_254006973.1 DUF2232 domain-containing protein -
  NMG62_RS00865 (ERYAMS2_00172) rpsR 182830..183063 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  NMG62_RS00870 (ERYAMS2_00173) ssb 183081..183554 (-) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene
  NMG62_RS00875 (ERYAMS2_00174) rpsF 183580..183870 (-) 291 WP_003774354.1 30S ribosomal protein S6 -
  NMG62_RS00880 (ERYAMS2_00175) - 184010..184648 (-) 639 WP_003774352.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NMG62_RS00885 (ERYAMS2_00176) - 184710..185561 (-) 852 WP_254006974.1 LysR family transcriptional regulator -
  NMG62_RS00890 (ERYAMS2_00177) - 185655..186218 (+) 564 WP_254006975.1 chromate transporter -
  NMG62_RS00895 (ERYAMS2_00178) - 186202..186741 (+) 540 WP_254006976.1 chromate transporter -
  NMG62_RS00900 (ERYAMS2_00179) lysS 186781..188265 (-) 1485 WP_254006977.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=1152395 NMG62_RS00870 WP_003774356.1 183081..183554(-) (ssb) [Erysipelothrix amsterdamensis strain A18Y016a]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1152395 NMG62_RS00870 WP_003774356.1 183081..183554(-) (ssb) [Erysipelothrix amsterdamensis strain A18Y016a]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACAGGTAAGTCAGTCGT
TTCGTTTACTGTAGCGTGCAATCGCCGCTTCGGTCAACAAGATGAAACTGATTTCATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCGAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATACGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGCCAATACCAGAATCAAAATAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCGTTCTCAATGGATGATGAGCCTGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369

Multiple sequence alignment