Detailed information NTG1152336

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OC536_RS02515
• Genome accession: NZ_OW443150
• Coordinates: 531894..532769 (-)
• Length: 291 a.a.
• NCBI ID: WP_032476647.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 526894..537769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC536_RS02495 (CNRVC190247_00506)	parC	527590..529875 (+)	2286	WP_032476645.1	DNA topoisomerase IV subunit A	-
OC536_RS02500 (CNRVC190247_00507)	yacG	530162..530359 (-)	198	WP_032476646.1	DNA gyrase inhibitor YacG	-
OC536_RS02505 (CNRVC190247_00508)	zapD	530517..531257 (-)	741	WP_000207194.1	cell division protein ZapD	-
OC536_RS02510 (CNRVC190247_00509)	coaE	531289..531897 (-)	609	WP_000011550.1	dephospho-CoA kinase	-
OC536_RS02515 (CNRVC190247_00510)	pilD	531894..532769 (-)	876	WP_032476647.1	A24 family peptidase	Machinery gene
OC536_RS02520 (CNRVC190247_00511)	pilC	532827..534053 (-)	1227	WP_032476648.1	type II secretion system F family protein	Machinery gene
OC536_RS02525 (CNRVC190247_00512)	pilB	534096..535784 (-)	1689	WP_032476649.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OC536_RS02530 (CNRVC190247_00513)	-	535791..536201 (-)	411	WP_032476650.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OC536_RS02535 (CNRVC190247_00514)	nadC	536447..537337 (-)	891	WP_000665277.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32437.74 Da
• Isoelectric Point: 7.6293

>NTDB_id=1152336 OC536_RS02515 WP_032476647.1 531894..532769(-) (pilD) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGKCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFGVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LMWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide

• Length: 876 bp

>NTDB_id=1152336 OC536_RS02515 WP_032476647.1 531894..532769(-) (pilD) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATTCCGCTACTGAGTTGGCTGGCGCTGCGCGGCAAATGCTCGCACTGTAAAGCACCGATCAGCGCTCGTTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTAATTGCCACTCACTTTCCGTTCGGAGTGTTTGGCGTGGCGCTGC
TGTTTTTCAGCTATGTGTTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACATTACCC
TTAATGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGTGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTTCGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATAGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	98.969	100	0.99
pilD	Vibrio campbellii strain DS40M4	76.042	98.969	0.753
pilD	Acinetobacter nosocomialis M2	54.044	93.471	0.505
pilD	Acinetobacter baumannii D1279779	53.676	93.471	0.502
pilD	Neisseria gonorrhoeae MS11	45.139	98.969	0.447