Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QM552_RS10350 Genome accession   NZ_OW011623
Coordinates   2266288..2267139 (-) Length   283 a.a.
NCBI ID   WP_282810209.1    Uniprot ID   -
Organism   Thauera humireducens strain Piv1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261288..2272139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM552_RS10330 (C4PIVTH_2149) - 2261497..2263146 (-) 1650 WP_048706002.1 response regulator -
  QM552_RS10335 (C4PIVTH_2150) aspS 2263329..2265128 (-) 1800 WP_282810207.1 aspartate--tRNA ligase -
  QM552_RS10340 (C4PIVTH_2151) - 2265197..2265820 (-) 624 WP_282810208.1 DUF502 domain-containing protein -
  QM552_RS10345 (C4PIVTH_2152) - 2265878..2266141 (-) 264 WP_048705998.1 FmdB family zinc ribbon protein -
  QM552_RS10350 (C4PIVTH_2153) pilD 2266288..2267139 (-) 852 WP_282810209.1 A24 family peptidase Machinery gene
  QM552_RS10355 (C4PIVTH_2154) pilC 2267143..2268372 (-) 1230 WP_038011757.1 type II secretion system F family protein Machinery gene
  QM552_RS10360 (C4PIVTH_2155) pilB 2268393..2270105 (-) 1713 WP_004261084.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QM552_RS10365 (C4PIVTH_2156) - 2270223..2271053 (-) 831 WP_282810210.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30762.43 Da        Isoelectric Point: 7.0924

>NTDB_id=1152201 QM552_RS10350 WP_282810209.1 2266288..2267139(-) (pilD) [Thauera humireducens strain Piv1]
MLALLQDPFAFTGVGALLGLFVGSFLNVVIHRLPRMMERDWHVQAAELRGEEVQPTERFNLATPRSRCPHCGHLIGALEN
IPVLSYLVLRGRCGHCGARISLRYPIVEAFTALLSGYAAWHFGFGLAAAGALLFIWTMVALAFIDIDTQLLPDDLTLPLL
WLGLLFNLGDTFSDLPSAVIGAMAGYLALWSVYWLFKLVTGKEGMGYGDFKLLAAIGAWLGWSLLPLTILLSSLVGAVVG
ITLIVLARHGRNVPIPFGPYLAAAGIIALFWGETLTSRYLGLL

Nucleotide


Download         Length: 852 bp        

>NTDB_id=1152201 QM552_RS10350 WP_282810209.1 2266288..2267139(-) (pilD) [Thauera humireducens strain Piv1]
ATGCTGGCGCTCTTGCAAGACCCGTTCGCCTTCACCGGCGTGGGCGCCCTGCTGGGATTGTTCGTCGGCAGCTTCCTGAA
CGTCGTGATCCACCGCCTGCCAAGGATGATGGAGCGTGACTGGCATGTACAAGCTGCCGAGTTGAGGGGCGAGGAGGTCC
AGCCGACCGAGCGCTTCAATCTCGCGACCCCGCGCTCGCGCTGCCCGCACTGCGGGCACCTCATCGGCGCGCTCGAGAAC
ATTCCGGTCCTGAGTTACCTCGTGCTGCGGGGGCGCTGCGGCCACTGCGGCGCCCGGATCAGCCTGCGCTACCCGATCGT
CGAGGCGTTCACCGCCCTGCTCTCGGGCTACGCTGCCTGGCATTTCGGTTTCGGGCTCGCGGCTGCCGGCGCCCTGCTGT
TCATCTGGACGATGGTGGCGCTGGCCTTCATCGACATCGATACGCAGCTGCTGCCCGACGATCTGACGCTTCCTCTGCTT
TGGCTTGGCCTGCTCTTCAACCTGGGCGACACCTTTAGCGACCTGCCCAGTGCCGTGATCGGCGCCATGGCAGGGTATCT
TGCGTTGTGGTCAGTGTATTGGCTGTTCAAGCTCGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCAAGCTGCTGG
CGGCCATTGGCGCCTGGCTGGGCTGGTCGCTGCTGCCGCTGACGATCCTGCTGTCGTCGCTCGTCGGCGCGGTCGTCGGC
ATCACCCTCATCGTCCTTGCCCGCCACGGTCGCAACGTGCCGATCCCCTTTGGCCCCTACCTGGCCGCAGCGGGCATCAT
CGCCCTGTTCTGGGGCGAGACCCTGACGTCCCGCTACCTCGGTCTGCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(133-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.273

97.173

0.537
  pilD Vibrio campbellii strain DS40M4

52.174

97.527

0.509
  pilD Acinetobacter baumannii D1279779

51.673

95.053

0.491
  pilD Acinetobacter nosocomialis M2

51.301

95.053

0.488
  pilD Neisseria gonorrhoeae MS11

50.19

92.933

0.466

Multiple sequence alignment