Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QM552_RS09765 Genome accession   NZ_OW011623
Coordinates   2135758..2136246 (+) Length   162 a.a.
NCBI ID   WP_094269608.1    Uniprot ID   -
Organism   Thauera humireducens strain Piv1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2130758..2141246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM552_RS09755 (C4PIVTH_2025) uvrA 2131536..2134373 (-) 2838 WP_282810129.1 excinuclease ABC subunit UvrA -
  QM552_RS09760 (C4PIVTH_2026) - 2134524..2135708 (+) 1185 WP_282810130.1 MFS transporter -
  QM552_RS09765 (C4PIVTH_2027) ssb 2135758..2136246 (+) 489 WP_094269608.1 single-stranded DNA-binding protein Machinery gene
  QM552_RS09770 (C4PIVTH_2028) - 2136363..2137328 (+) 966 WP_094269609.1 MBL fold metallo-hydrolase -
  QM552_RS09775 (C4PIVTH_2029) - 2137345..2138199 (+) 855 WP_282810131.1 tRNA threonylcarbamoyladenosine dehydratase -
  QM552_RS09780 (C4PIVTH_2030) - 2138258..2138647 (+) 390 WP_282810132.1 sirohydrochlorin chelatase -
  QM552_RS09785 (C4PIVTH_2031) - 2138715..2139785 (+) 1071 WP_282810133.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17864.75 Da        Isoelectric Point: 5.9624

>NTDB_id=1152199 QM552_RS09765 WP_094269608.1 2135758..2136246(+) (ssb) [Thauera humireducens strain Piv1]
MASVNKVILIGNLGADPESRFAPSGDAICNIRLATTENWRDKNTGERREATEWHRVTFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQSGQDRYTTEIRADEMKMLGRREGGDAPMRGSEGGYDAPAPAPRQAPAAAPRPQSQPAQSSSGFGDFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1152199 QM552_RS09765 WP_094269608.1 2135758..2136246(+) (ssb) [Thauera humireducens strain Piv1]
ATGGCATCCGTCAACAAAGTCATCCTGATCGGCAACCTCGGCGCCGATCCCGAAAGCCGCTTCGCGCCGTCCGGCGACGC
CATCTGCAACATCCGCCTGGCGACCACCGAGAACTGGCGCGACAAGAACACCGGCGAACGCCGTGAAGCCACCGAATGGC
ATCGCGTCACGTTCTACGGCAAGCTCGCCGAGATCGCTGGTCAGTACCTGCGCAAGGGCAGCCAGGTCTACATCGAGGGC
AGCCTGCGCACGCGCAAGTGGCAGGACCAGAGTGGTCAGGACCGCTACACCACCGAGATCCGTGCCGACGAGATGAAGAT
GCTTGGCCGCCGTGAGGGCGGCGACGCGCCGATGCGCGGCTCCGAGGGCGGCTACGATGCCCCCGCGCCGGCCCCGCGCC
AGGCCCCGGCGGCGGCGCCGCGCCCGCAGTCGCAGCCTGCGCAGTCCTCGTCGGGTTTCGGTGATTTCGACGACGACATC
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.648
  ssb Glaesserella parasuis strain SC1401

49.735

100

0.58
  ssb Neisseria gonorrhoeae MS11

49.718

100

0.543
  ssb Neisseria meningitidis MC58

48.851

100

0.525

Multiple sequence alignment