Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MD993_RS01620 Genome accession   NZ_OV648025
Coordinates   372234..372737 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus argenteus isolate 20S00001-1_long     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 367234..377737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MD993_RS01590 - 368182..369027 (+) 846 WP_014373770.1 ParB/RepB/Spo0J family partition protein -
  MD993_RS01595 - 369173..370054 (+) 882 WP_000373078.1 mechanosensitive ion channel family protein -
  MD993_RS01600 - 370084..370287 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  MD993_RS01605 ychF 370299..371396 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  MD993_RS01610 - 371482..371673 (-) 192 WP_031787414.1 hypothetical protein -
  MD993_RS01615 rpsF 371917..372213 (+) 297 WP_001261459.1 30S ribosomal protein S6 -
  MD993_RS01620 ssbA 372234..372737 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  MD993_RS01625 rpsR 372789..373031 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  MD993_RS01630 - 373267..374274 (-) 1008 WP_031787415.1 Abi family protein -
  MD993_RS01635 - 374280..374695 (-) 416 Protein_324 tyrosine-type recombinase/integrase -
  MD993_RS01640 - 374936..375547 (+) 612 WP_031787416.1 exotoxin beta-grasp domain-containing protein -
  MD993_RS01645 - 375919..376290 (+) 372 WP_031787417.1 YxeA family protein -
  MD993_RS01650 - 376467..377039 (+) 573 WP_031787418.1 PepSY domain-containing protein -
  MD993_RS01655 - 377175..377438 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1151878 MD993_RS01620 WP_000934799.1 372234..372737(+) (ssbA) [Staphylococcus argenteus isolate 20S00001-1_long]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1151878 MD993_RS01620 WP_000934799.1 372234..372737(+) (ssbA) [Staphylococcus argenteus isolate 20S00001-1_long]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACATTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTATAATAACTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment