Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQ983_RS04235 Genome accession   NZ_OV100759
Coordinates   912852..913328 (-) Length   158 a.a.
NCBI ID   WP_048750111.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 907852..918328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS04210 - 908186..908572 (+) 387 WP_230621761.1 pilus assembly protein PilP -
  LQ983_RS04215 comE 908592..910016 (+) 1425 WP_230621762.1 type IV pilus secretin PilQ Machinery gene
  LQ983_RS04220 aroK 910231..910758 (+) 528 WP_048750075.1 shikimate kinase AroK -
  LQ983_RS04225 aroB 910792..911880 (+) 1089 WP_230621763.1 3-dehydroquinate synthase -
  LQ983_RS04230 - 911886..912752 (+) 867 WP_230621764.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LQ983_RS04235 ssb 912852..913328 (-) 477 WP_048750111.1 single-stranded DNA-binding protein Machinery gene
  LQ983_RS04240 uvrA 913498..916329 (+) 2832 WP_230621765.1 excinuclease ABC subunit UvrA -
  LQ983_RS04245 pssA 916463..917830 (-) 1368 WP_230621766.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17617.47 Da        Isoelectric Point: 5.3111

>NTDB_id=1151815 LQ983_RS04235 WP_048750111.1 912852..913328(-) (ssb) [Aggregatibacter sp. Marseille-P9115]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRQSGGYAPAAQPTYPSQAQSAPRATPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1151815 LQ983_RS04235 WP_048750111.1 912852..913328(-) (ssb) [Aggregatibacter sp. Marseille-P9115]
ATGGCTGGAGTAAATAAAGTCATTATTGTTGGTAACTTAGGTAACGATCCTGAAATTCGCACCATGCCGAACGGCGAAGC
GGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGATAAAAATACCGGCGAACGTCGTGAAGTGACCGAATGGC
ACCGCATTGTGTTCTATCGCCGTCAAGCAGAAGTGGCAGGCGAATACTTACGCAAAGGCTCTAAAGTCTATGTTGAAGGA
CGTTTAAAAACCCGTAAATGGCAAGATCAAAACGGCCAAGATCGCTACACCACAGAAATTCAAGGCGATGTTTTACAAAT
GTTAGACAGTCGCTCAGATCGTCAATCCGGTGGTTATGCGCCAGCCGCTCAACCAACTTATCCAAGTCAAGCGCAGAGCG
CACCACGTGCAACCCCTGCAAGCAAACCGGCAGCCGAAGCACCGATGGATAACTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.444

100

0.791
  ssb Vibrio cholerae strain A1552

55.747

100

0.614
  ssb Neisseria meningitidis MC58

47.727

100

0.532
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.532

Multiple sequence alignment