Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KOD61_RS04305 Genome accession   NZ_OU015430
Coordinates   918056..918550 (+) Length   164 a.a.
NCBI ID   WP_215219822.1    Uniprot ID   -
Organism   Novilysobacter luteus strain CECT 30171     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 913056..923550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOD61_RS04285 (LYB30171_00859) murL 913231..914592 (+) 1362 WP_215219818.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  KOD61_RS04290 (LYB30171_00860) murD 914573..915976 (+) 1404 WP_215219819.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  KOD61_RS04295 (LYB30171_00861) - 916044..916835 (+) 792 WP_215219820.1 dienelactone hydrolase family protein -
  KOD61_RS04300 (LYB30171_00862) - 916857..917855 (-) 999 WP_215219821.1 polyprenyl synthetase family protein -
  KOD61_RS04305 (LYB30171_00863) ssb 918056..918550 (+) 495 WP_215219822.1 single-stranded DNA-binding protein Machinery gene
  KOD61_RS04310 (LYB30171_00864) rfbB 918604..919656 (+) 1053 WP_215219823.1 dTDP-glucose 4,6-dehydratase -
  KOD61_RS04315 (LYB30171_00865) rfbA 919667..920551 (+) 885 WP_215219824.1 glucose-1-phosphate thymidylyltransferase RfbA -
  KOD61_RS04320 (LYB30171_00866) rfbC 920548..921105 (+) 558 WP_215219825.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  KOD61_RS04325 (LYB30171_00867) rfbD 921113..922006 (+) 894 WP_215219826.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17753.62 Da        Isoelectric Point: 5.3670

>NTDB_id=1150992 KOD61_RS04305 WP_215219822.1 918056..918550(+) (ssb) [Novilysobacter luteus strain CECT 30171]
MARGVNKVILVGNLGNDPETKYTQGGMAVTTLSLATTSVRKDRDGNTQERTEWHRVKLFGKLGEIAGEYLKKGRQVYIEG
SIRYDKFTGQDGVEKYFTDIVADEMQMLGGGGEGGGAGGGGYRGGDRSERPARTAARQEAPRRDAPPAKSNDFGDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1150992 KOD61_RS04305 WP_215219822.1 918056..918550(+) (ssb) [Novilysobacter luteus strain CECT 30171]
ATGGCACGTGGCGTAAACAAGGTGATCCTCGTCGGCAACCTCGGCAACGATCCCGAGACCAAGTACACCCAGGGCGGCAT
GGCCGTGACCACGCTCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAATACCCAGGAGCGCACAGAGTGGC
ACCGGGTCAAGCTGTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGGCAGGTCTACATCGAAGGC
TCGATCCGCTACGACAAGTTCACCGGGCAGGACGGCGTCGAGAAATACTTCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCGGGGGCGAGGGTGGCGGCGCCGGCGGTGGCGGCTACCGCGGCGGTGATCGCAGCGAGCGCCCGGCACGCA
CGGCGGCCCGGCAGGAAGCGCCGCGGCGCGACGCGCCGCCGGCCAAGTCGAATGACTTCGGCGACGACTTCGCGGATGAC
GATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

46.023

100

0.494
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.494
  ssb Vibrio cholerae strain A1552

45.198

100

0.488
  ssb Glaesserella parasuis strain SC1401

39.444

100

0.433

Multiple sequence alignment